Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0717.Seq
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67270.1 68418.m08480 microtubule-associated EB1 family prote...    32   0.47 
At1g11060.1 68414.m01267 expressed protein                             29   2.5  
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    29   3.3  
At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom...    28   7.6  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    28   7.6  

>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profiles PF00307: Calponin homology (CH)
           domain, PF03271: EB1 protein
          Length = 329

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -2

Query: 222 PTSTLTEEHRDRILILNRRFLERRLTDDISANVSVSPRMRCTDSAAHKCN 73
           P +  +EE R+ +    +R L   L  D++A  ++SPR R +D++  KC+
Sbjct: 272 PIAEGSEERRNSVTESQKRKLIVNLDVDVAAITTLSPRQRLSDASDVKCS 321


>At1g11060.1 68414.m01267 expressed protein 
          Length = 930

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 415 RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPLWHSN 245
           RR       ++  +   +    YL    +  IEP  YS++P   +SS   S LWHS+
Sbjct: 65  RRKPGIPRTLSDSLNDSVSQTEYLSSSSSPDIEPIDYSLLP---FSSQESSSLWHSS 118


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = -1

Query: 415 RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPLWHSNLFK 236
           RRS + + N+    PP+ PI+H    L   KI+PR    +   +  +S  S L    L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 235 VKLSAHL 215
               AHL
Sbjct: 112 KAAEAHL 118


>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 840

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 630 KELTEGHHQEWSLRLNLTQHGKSHQARTPEG 722
           KEL+EG HQE   + N    GK ++ R P G
Sbjct: 238 KELSEGFHQERDGKKN--AEGKGYECRIPAG 266


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 619 LCNHTPPGVQNLWFPGSCPP 560
           +C   PP  + LWFPGS PP
Sbjct: 57  VCEPLPPD-RPLWFPGSSPP 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,049,944
Number of Sequences: 28952
Number of extensions: 350801
Number of successful extensions: 850
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)