Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0715.Seq
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   4.8  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   4.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   6.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   6.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   6.3  

>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 676 ALFFDRCTAPVKLPAWQC 729
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 676 ALFFDRCTAPVKLPAWQC 729
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 262 TRPAAGGAKLPSAGLC 215
           ++ +  G ++PSAGLC
Sbjct: 97  SKKSCQGCEMPSAGLC 112


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = -1

Query: 764  SRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 639
            S L  PR P   H  +     A   S + +G  R     +KP
Sbjct: 914  SPLTSPRQPAETHAGSPCRNSASPASSDRSGTPRSTNGDRKP 955


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 262 TRPAAGGAKLPSAGLC 215
           ++ +  G ++PSAGLC
Sbjct: 45  SKKSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 262 TRPAAGGAKLPSAGLC 215
           ++ +  G ++PSAGLC
Sbjct: 228 SKKSCQGCEMPSAGLC 243


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,591
Number of Sequences: 336
Number of extensions: 3934
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)