Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0715.Seq
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 35 0.083
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.3
07_03_0846 - 21983581-21986055 29 3.1
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 29 4.1
06_01_0655 + 4742267-4742531,4743313-4744136 29 4.1
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 29 4.1
03_05_0183 - 21681673-21682524 29 4.1
09_04_0235 + 15904891-15905218,15906732-15907594 28 7.2
11_06_0715 + 26552962-26553510,26553578-26555746 28 9.5
08_02_1485 - 27466761-27467753 28 9.5
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.5
>09_04_0593 -
18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 34.7 bits (76), Expect = 0.083
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -2
Query: 301 VREEPQFRTF-GSCTRPAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 125
+++EP+FR F GS R +K +AG+ N + A +++++S K + E SG
Sbjct: 691 IKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAASSAISDSNK-KVNQETAASG---- 745
Query: 124 CDFTSRVSHSKRETRRRSPFGSRRSMLS 41
VS+S R+ + + FGS +S S
Sbjct: 746 ------VSNSTRQKKGKLVFGSNKSSSS 767
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 193 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 59
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 51 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 200
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 117 KSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAAGRVHEPNVRNCGS- 293
KS L+P G+ ++ L A + ++H P + PAA P VR G
Sbjct: 22 KSGALQPQPPHGAAAAVRL---AYTHDGIAVYKHTPPPPVYQTPAAVAAPSPPVRGNGGA 78
Query: 294 -SRTEQYYYRNDKP 332
+ EQ+ + +P
Sbjct: 79 PASAEQHKRKRGRP 92
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Frame = +3
Query: 51 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 227
++RDP G+R + F +++ E RG ++ PD A +AS R +
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVASQ----RSHAE 184
Query: 228 DGSFAPPAAGRVHEPNVRNCGSS---RTEQYYY 317
S PA +P V + G+ T Y Y
Sbjct: 185 PSSMNMPAFSIEEKPAVMSAGNKTMYNTNAYAY 217
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 527 HLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSL--TDVP 700
+L+L LY RA AV + E L Q CP+ ++ LAE+ L +SL + P
Sbjct: 579 NLMLGKLYRISRNNRAAAVCYK-ECLRQ---CPYVFEAITALAEMGLSSKEFSLIFSQAP 634
Query: 701 PQSNSPPGSVLE 736
+ PG L+
Sbjct: 635 NRGGKAPGDSLD 646
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 491 SQAFIATLLFDPSMSALPIIAKQNSPS 411
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>09_04_0235 + 15904891-15905218,15906732-15907594
Length = 396
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 51 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 227
++RDP+ G+R + + +++ E RG ++ PD +A L ++
Sbjct: 150 EIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPDEPAVAQKLSLKQNAAK 209
Query: 228 DGSFAPP 248
APP
Sbjct: 210 QEKLAPP 216
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 405 SNAWRILLRNDRKSRHRRIKKQRRYERLAATSQLSCGNFSGT 530
S+ +L N K H +KK R RLA T LSC +G+
Sbjct: 728 SDEEEVLQLNGLKWLHPNVKKLRLIGRLAQTGLLSCAPEAGS 769
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 135 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAAGRV 263
PP + G +S +P A LA++L + NPA S PP ++
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPA--SPPPPPTSKL 79
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 202 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 29
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 28 TRASR 14
TRA+R
Sbjct: 64 TRAAR 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,540,921
Number of Sequences: 37544
Number of extensions: 504377
Number of successful extensions: 1537
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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