Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0715.Seq
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        25   0.79 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +2

Query: 620 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGTS 769
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G    TS
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTS 79


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 283 FRTFGSCTRPAAGGAKLPSA 224
           F    SCTRP+ G A +PS+
Sbjct: 10  FLLLSSCTRPSRGNA-VPSS 28


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 283 FRTFGSCTRPAAGGAKLPSA 224
           F    SCTRP+ G A +PS+
Sbjct: 10  FLLLSSCTRPSRGNA-VPSS 28


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 340 GKTNLSHDGLNPAHVPF*WVNNPTLG 417
           GK N      +PA  PF W ++ + G
Sbjct: 404 GKENYQTMSRDPARTPFQWDDSVSAG 429


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 340 GKTNLSHDGLNPAHVPF*WVNNPTLG 417
           GK N      +PA  PF W ++ + G
Sbjct: 404 GKENYQTMSRDPARTPFQWDDSVSAG 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,674
Number of Sequences: 438
Number of extensions: 4970
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)