Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0715.Seq
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.85 
At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family...    30   1.5  
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    30   2.0  
At1g14740.1 68414.m01762 expressed protein                             29   2.6  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.4  
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo...    28   7.9  
At4g27120.2 68417.m03898 expressed protein                             28   7.9  
At4g27120.1 68417.m03897 expressed protein                             28   7.9  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 503 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 396
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 217

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +3

Query: 135 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAAGRVHEPNVRNCGSSRTEQYY 314
           PP    ST   + P  +  +S     R  P    FAPP + ++  P+  +   S +   Y
Sbjct: 46  PPLKLKSTPPSNSPSPSSSSSFFSESRSRPVS-PFAPPPSFKLKSPSDSDSNCSASPTPY 104

Query: 315 YRNDKPSVG 341
           +R+  P  G
Sbjct: 105 FRSSSPRAG 113


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
            transcription factor (HUA2) - Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1445

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 123  HCLEPPDSR-GSTVSISLPDSARLASALEAFRHNPADGSFAPPA 251
            HCL PP +      SI+LP S+    ++ +    P    FAPPA
Sbjct: 1162 HCLPPPTAPLAPAQSIALPPSSITRPSMPSHPSLPLQPGFAPPA 1205


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -2

Query: 310 YCSVREEPQFRTFGSCTRPAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGS 131
           + +VR       F S + P +G  +L  + LC N+ K   SL + GK+++T     S   
Sbjct: 46  FLNVRSNNLDGGFSSKSSPRSGN-ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDD 104

Query: 130 K--QCDFTSRVSHSKRETRRRS 71
           K  + DF +    +   ++R++
Sbjct: 105 KWVERDFFNLREMNPNSSKRKA 126


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 658 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 545
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase familiy protein
           similar to SP|O14072 Cation-transporting ATPase 4 (EC
           3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
           accession IPR001757: ATPase, E1-E2 type; contains Pfam
           profile PF00702: haloacid dehalogenase-like hydrolase
          Length = 1179

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 524 WHLLLKTLYTKGSIG-RAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTD 694
           +H+L+  L+T  S+  + F    +   +DQA  C   P + S   E+   H R  +TD
Sbjct: 61  FHILV-LLFTTWSVDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTD 117


>At4g27120.2 68417.m03898 expressed protein
          Length = 298

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -2

Query: 301 VREEPQFRTFGSCTRPAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-Q 125
           V E PQ +   +  R A GG ++        AS + +++ E+G      +  E+GG++ +
Sbjct: 35  VAEPPQVQPRENVAR-AGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQAR 93

Query: 124 CDFTSRVSHSKRETRRRSPFGSRRS 50
                     +RE +R++   +R S
Sbjct: 94  ASKKKEKKRQEREAQRQAEEATRES 118


>At4g27120.1 68417.m03897 expressed protein
          Length = 298

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -2

Query: 301 VREEPQFRTFGSCTRPAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-Q 125
           V E PQ +   +  R A GG ++        AS + +++ E+G      +  E+GG++ +
Sbjct: 35  VAEPPQVQPRENVAR-AGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQAR 93

Query: 124 CDFTSRVSHSKRETRRRSPFGSRRS 50
                     +RE +R++   +R S
Sbjct: 94  ASKKKEKKRQEREAQRQAEEATRES 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,456,478
Number of Sequences: 28952
Number of extensions: 376284
Number of successful extensions: 1074
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)