Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0714.Seq
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 175 6e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 102 5e-23
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 102 7e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 72 1e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 67 3e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 61 2e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 49 8e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 49 8e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 34 0.026
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.32
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 29 0.74
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 3.0
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 3.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.2
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 26 6.9
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 9.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 175 bits (426), Expect = 6e-45
Identities = 78/85 (91%), Positives = 82/85 (96%)
Frame = +3
Query: 255 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 434
PIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN+
Sbjct: 70 PIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNA 129
Query: 435 PAMYVAIQAVLSLYASGRTTGIVLD 509
PA YVAIQAVLSLYASGRTTGIVLD
Sbjct: 130 PAFYVAIQAVLSLYASGRTTGIVLD 154
Score = 141 bits (341), Expect = 1e-34
Identities = 62/69 (89%), Positives = 68/69 (98%)
Frame = +1
Query: 52 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 231
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 232 RGILTLKYP 258
RGILTLKYP
Sbjct: 62 RGILTLKYP 70
Score = 133 bits (322), Expect = 2e-32
Identities = 61/66 (92%), Positives = 65/66 (98%)
Frame = +2
Query: 509 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE 688
SGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKE
Sbjct: 155 SGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKE 214
Query: 689 KLCYVA 706
KLCYVA
Sbjct: 215 KLCYVA 220
Score = 32.7 bits (71), Expect = 0.060
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 706 LDFEQEMATAAASTSLEKS 762
LDFEQE+ TAA S+SLEKS
Sbjct: 221 LDFEQELQTAAQSSSLEKS 239
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 102 bits (245), Expect = 5e-23
Identities = 43/85 (50%), Positives = 65/85 (76%)
Frame = +3
Query: 255 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 434
P+E+GII ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE +
Sbjct: 70 PMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGF 129
Query: 435 PAMYVAIQAVLSLYASGRTTGIVLD 509
+YVAIQAVLSLYA G ++G+V+D
Sbjct: 130 GGVYVAIQAVLSLYAQGLSSGVVVD 154
Score = 87.8 bits (208), Expect = 1e-18
Identities = 38/66 (57%), Positives = 50/66 (75%)
Frame = +2
Query: 509 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE 688
SGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR++KE
Sbjct: 155 SGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKE 214
Query: 689 KLCYVA 706
KLCYV+
Sbjct: 215 KLCYVS 220
Score = 64.5 bits (150), Expect = 2e-11
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Frame = +1
Query: 64 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 237
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 238 ILTLKYP 258
+L +KYP
Sbjct: 64 LLQVKYP 70
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 102 bits (244), Expect = 7e-23
Identities = 47/86 (54%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 PIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 431
PIE GII NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N
Sbjct: 74 PIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLN 133
Query: 432 SPAMYVAIQAVLSLYASGRTTGIVLD 509
PA+ ++Q VL+LYAS RTTGIVL+
Sbjct: 134 VPALSFSLQPVLALYASARTTGIVLE 159
Score = 86.2 bits (204), Expect = 5e-18
Identities = 36/66 (54%), Positives = 53/66 (80%)
Frame = +2
Query: 512 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 691
GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+IKEK
Sbjct: 161 GDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEK 220
Query: 692 LCYVAS 709
CYVAS
Sbjct: 221 CCYVAS 226
Score = 79.0 bits (186), Expect = 7e-16
Identities = 35/67 (52%), Positives = 47/67 (70%)
Frame = +1
Query: 58 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 237
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 238 ILTLKYP 258
+L ++ P
Sbjct: 68 LLKIQRP 74
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 97.5 bits (232), Expect = 2e-21
Identities = 42/78 (53%), Positives = 53/78 (67%)
Frame = +3
Query: 249 EVPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 428
+ PI HG I NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+F
Sbjct: 91 DYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESF 150
Query: 429 NSPAMYVAIQAVLSLYAS 482
N +Y+A+QAVL+L AS
Sbjct: 151 NCAGLYIAVQAVLALAAS 168
Score = 55.6 bits (128), Expect = 7e-09
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +2
Query: 509 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDI 682
SGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER I
Sbjct: 186 SGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----I 240
Query: 683 KEKLCYV 703
KE+ CYV
Sbjct: 241 KEECCYV 247
Score = 42.7 bits (96), Expect = 6e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 70 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 219
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.7 bits (168), Expect = 1e-13
Identities = 32/84 (38%), Positives = 48/84 (57%)
Frame = +3
Query: 258 IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 437
I +G + NWD +W + +L+ P EHP+L+TE NP NR K + MFE+ P
Sbjct: 69 IRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCP 128
Query: 438 AMYVAIQAVLSLYASGRTTGIVLD 509
A Y+A Q + +ASG+ T ++D
Sbjct: 129 ATYLAKQETCAAFASGKGTACLVD 152
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 55 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 156
D+V+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.9 bits (156), Expect = 3e-12
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 434
P E +I+NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N+
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 435 PAMYVAIQAVLSLYASGR--TTGIVLD 509
P++ I + S Y + + ++GIVL+
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLN 171
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +1
Query: 1 ESIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 165
E + + PT + F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 8 EPVFSGPTPS---FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/66 (22%), Positives = 27/66 (40%)
Frame = +2
Query: 512 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 691
G+ SH +P+ G + R+ G + YL+K+ + SF +
Sbjct: 173 GNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHD 232
Query: 692 LCYVAS 709
C+V+S
Sbjct: 233 HCHVSS 238
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 60.9 bits (141), Expect = 2e-10
Identities = 25/82 (30%), Positives = 49/82 (59%)
Frame = +3
Query: 264 HGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAM 443
+GII +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 444 YVAIQAVLSLYASGRTTGIVLD 509
Y+ QAV +A+ ++T +++D
Sbjct: 134 YLTKQAVCVAFANSKSTALIVD 155
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +1
Query: 55 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 225
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 48.8 bits (111), Expect = 8e-07
Identities = 23/66 (34%), Positives = 40/66 (60%)
Frame = +2
Query: 509 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE 688
SG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV +IKE
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKE 220
Query: 689 KLCYVA 706
+CYV+
Sbjct: 221 SVCYVS 226
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 48.8 bits (111), Expect = 8e-07
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +3
Query: 240 PHSEVPIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMT 407
P+ PI+ G + +W+ ++ W H Y+ L P + +PV L +RE T
Sbjct: 108 PNEIQPIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELAT 166
Query: 408 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLD 509
Q FE P +A + ++ LYA G G+V+D
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIGILHGLVID 200
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 33.9 bits (74), Expect = 0.026
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 115 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPSSTVS 273
G+ PRA F ++ P H G+++ M KD G+E S +G + + P + +S
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTPENEIS 552
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.32
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 315 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 458
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 772 ESSWTSRGRWRRQRWPSPARSRGDIAELLLDV 677
++S ++R + RR +W R RGD E+LL V
Sbjct: 438 DTSQSTRKKSRRNKWHFGVRCRGDAPEILLAV 469
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Frame = -1
Query: 766 SWTSRGRWRRQRWP-SPARSRGDIAE-------LLLDVTNDF 665
+W+S GR RR WP S RS E L+ D++NDF
Sbjct: 644 NWSSIGRLRRSEWPRSFNRSSQQFVEKQIIAGRLMCDLSNDF 685
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 540 STKVTLCPTPSSVWTW 587
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 357 LLTEAPLNPKANREKMTQIMFETFN 431
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +3
Query: 252 VPIEHGIITNWDDME-KIWH--HTFYNELRVAPEEHPVLLTEAPLNP 383
VP + +I + DD +W+ HTF+++ + P EH + ++++ +NP
Sbjct: 265 VPQGNFVIGSADDRTLNVWNLRHTFHHKGKTRPPEHRI-VSQSIINP 310
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +2
Query: 539 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 646
+ EG +P++ ++++ G D+T MK+L + +
Sbjct: 308 VEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,681
Number of Sequences: 5004
Number of extensions: 63432
Number of successful extensions: 256
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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