Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0713.Seq
         (609 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.6  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   6.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   6.1  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   6.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
 Frame = -1

Query: 150  DCASSV-CLWGLAMVLNC 100
            DC   + CLWG   V NC
Sbjct: 1290 DCTRYLHCLWGKYEVFNC 1307


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 216 IRVFKKNLRSHNRGVRTRG*AQGPGGETR 302
           ++ F K  RS  RG++  G   GP  ++R
Sbjct: 5   LQEFGKRGRSTGRGLKYSGQQHGPQSDSR 33


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 418 TAQQNDQAQRMECGANEFTRKLRVDQG 498
           T+Q +DQ + +E   NE ++    D+G
Sbjct: 91  TSQVDDQNESLEASVNENSKNGDDDEG 117


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 577 TKIRRYRPRPP 609
           TK+ R +PRPP
Sbjct: 258 TKVSRRKPRPP 268


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 471 EFIGSALHSLRLIVLLRGRFCRLSF 397
           E +   LHS+R++ +    FC ++F
Sbjct: 4   EVVKKFLHSVRIVFVQSEIFCLVNF 28


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 404 RRQNRPRNKTIRRREWSA 457
           + +  PRN T+RR++ S+
Sbjct: 111 QHERGPRNSTLRRQQMSS 128


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 404 RRQNRPRNKTIRRREWSA 457
           + +  PRN T+RR++ S+
Sbjct: 111 QHERGPRNSTLRRQQMSS 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,258
Number of Sequences: 336
Number of extensions: 2470
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)