Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0713.Seq
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.17
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 29 0.70
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 28 0.93
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.1
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 2.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 3.7
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 26 5.0
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 26 5.0
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 8.7
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 8.7
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = -1
Query: 603 ARTIPPNLRLK-----EPPCKTFLSCVEYPFLDLHDYLFFSLINTQFP 475
AR + P + K E PCK +E + HDYL+F LI+ P
Sbjct: 482 ARIVSPEILTKIQEQVENPCKAAREVLEKKQMKRHDYLYFILISDDVP 529
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 28.7 bits (61), Expect = 0.70
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +2
Query: 434 IRRREWSAEPMNSPGNCVLIREXXXXXXXXXNGYSTQERNVLQGGSFRRRFGGIVRAR 607
I + +++ +PMN PG+CV+ + + + VL F G+ R R
Sbjct: 369 IEKEKYALKPMNCPGHCVMFKSRDRSYRDLP--WRVADFGVLHRNEFSGALSGLTRVR 424
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 28.3 bits (60), Expect = 0.93
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 361 PPAVYGIAHVHPFVRLAPRPRVSPPGP*AQPRVRTPR-LCDLKFFLKTLIS 212
PP GI + HP VR P+P SP P TP F+ +LIS
Sbjct: 151 PPNQIGI-NAHPAVRQTPQPAPSPNTPSGNANQLTPAYAASFDKFMVSLIS 200
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = +1
Query: 340 QCHKLLEEIKSKERTIALLKREAAKST 420
QCH+L+EE++ ++ + +RE +++T
Sbjct: 427 QCHQLIEELRDEKHQHDIEEREGSENT 453
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -1
Query: 558 KTFLSCVEYPFLDLHDYLFFSLINTQFPGEFIGSALHSLRLIVLLRGRFCRLSFQQCYCP 379
K L EY LD+ ++L FS I TQ L+ + + L+ FC +F
Sbjct: 1166 KVILEQCEYVILDILNFLKFSGIPTQSKKRLEVHMLNFISSTLYLKVSFCSSNFLFKTIS 1225
Query: 378 LLRFDFL 358
+L +D +
Sbjct: 1226 VLVYDLI 1232
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 182 LTTEVQSLKAAYKGLQEKLKVA 247
LTTE QSL+ A LQE+ K+A
Sbjct: 117 LTTENQSLRRANSELQEQSKIA 138
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +2
Query: 230 EKLKVAQSGSAHARLSSGPRRRDTRPWSKPHEGMHVRNAINCWRK 364
E +K + + H + R D W + +G+H+ N W K
Sbjct: 15 EDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEK 59
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 95 EKQLRTIARPHKQTDDAQSACGRLTDVKRLTTE 193
EKQL T PH+ D + +L + + T E
Sbjct: 101 EKQLNTANEPHEANDQTSAQSSKLIEAQLPTVE 133
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%)
Frame = +2
Query: 20 RALKARYDSALRNLKTEHR*REEFLEKQLRTIARPHKQTDDAQSACGRLTDVKRLTTEVQ 199
RAL+ YD+ LR +T R + ++Q R + R +++ + + A R + + +
Sbjct: 226 RALQREYDTQLRAFRTYEREQRAKRQEQFR-LERENREKEKRRIAAQRKLEEASIPAFTE 284
Query: 200 SLKAAYKGLQEKLKVAQSGSAHARLSSG 283
+ A + L + V S +S+G
Sbjct: 285 EILAC-ENLLKVFHVPVESSTTNAVSTG 311
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 458 PHSILCA*SFCCAVDFAASRF 396
PH ILC+ +F AVD RF
Sbjct: 217 PHKILCSDAFSEAVDSLRERF 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,171
Number of Sequences: 5004
Number of extensions: 42010
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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