Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0713.Seq
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.4  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   5.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   5.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.4  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 256 PRLCDLKFFLKTLISCF*RLNLCC*SFD 173
           PR CD       + S    LNLC  S D
Sbjct: 95  PRFCDTWIAFDVMCSTASILNLCAISLD 122


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 86  LLATCVQSLDS*ERCHNGL 30
           +L+ C+ +  S ++C NGL
Sbjct: 114 MLSECINANKSTDKCENGL 132


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 182 LTTEVQSLKAAYKGLQE 232
           LTTEV+S++  ++ LQE
Sbjct: 228 LTTEVKSVEMHHEALQE 244


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 182 LTTEVQSLKAAYKGLQE 232
           LTTEV+S++  ++ LQE
Sbjct: 285 LTTEVKSVEMHHEALQE 301


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 366 QIEGADNSTAETRGGKI 416
           +IE A      TRGGKI
Sbjct: 784 EIESATEGAYTTRGGKI 800


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 401 ERRQNRPRNKTIRRREWSAEPMNS 472
           ERR +R RN+  R+++   E +++
Sbjct: 234 ERRCSRDRNREYRKKDRQYEKLHN 257


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 398 NERRQNRPRNKTIRRREWSAEPMNS 472
           NERR   P ++T ++    + P+N+
Sbjct: 179 NERRTPDPHDETAKKPRVLSPPLNN 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,322
Number of Sequences: 438
Number of extensions: 3243
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)