Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0713.Seq
(609 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18876.2 68415.m02202 expressed protein 31 0.45
At2g18876.1 68415.m02201 expressed protein 31 0.45
At5g57410.1 68418.m07172 expressed protein 31 0.79
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L... 31 0.79
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 29 1.8
At1g75310.1 68414.m08748 DNAJ heat shock N-terminal domain-conta... 29 1.8
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to... 29 3.2
At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS cla... 27 7.4
At5g46490.1 68418.m05724 disease resistance protein (TIR-NBS cla... 27 7.4
At2g48160.1 68415.m06031 PWWP domain-containing protein 27 7.4
At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma m... 27 7.4
At2g07020.1 68415.m00803 protein kinase family protein contains ... 27 7.4
At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--t... 27 9.7
At4g03000.2 68417.m00408 expressed protein contains similarity t... 27 9.7
At4g03000.1 68417.m00407 expressed protein contains similarity t... 27 9.7
At1g80990.1 68414.m09504 XH domain-containing protein contains P... 27 9.7
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote... 27 9.7
>At2g18876.2 68415.m02202 expressed protein
Length = 284
Score = 31.5 bits (68), Expect = 0.45
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +1
Query: 337 AQCHKLLEEIKSKERTIALLKREAAKSTAQQNDQAQRMECGANEFTRKLRVDQ 495
A+ +L ++++KER + + R AK+TA Q ++++ +EF R + +Q
Sbjct: 6 AKVERLETQLQAKERELGSVTRTEAKNTAALKTQNEKLQKERDEFQRMVIANQ 58
>At2g18876.1 68415.m02201 expressed protein
Length = 382
Score = 31.5 bits (68), Expect = 0.45
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +1
Query: 337 AQCHKLLEEIKSKERTIALLKREAAKSTAQQNDQAQRMECGANEFTRKLRVDQ 495
A+ +L ++++KER + + R AK+TA Q ++++ +EF R + +Q
Sbjct: 104 AKVERLETQLQAKERELGSVTRTEAKNTAALKTQNEKLQKERDEFQRMVIANQ 156
>At5g57410.1 68418.m07172 expressed protein
Length = 373
Score = 30.7 bits (66), Expect = 0.79
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 337 AQCHKLLEEIKSKERTIALLKREAAKSTAQQNDQAQRMECGANEFTR 477
A+ +L ++ K+R IA + R AK+TA Q ++++ +EF R
Sbjct: 100 AKVERLEALLQQKDREIATITRTEAKNTAALKSQIEKLQQERDEFQR 146
>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
PROTEIN KIF4, Homo sapiens, EMBL:AF179308
Length = 1051
Score = 30.7 bits (66), Expect = 0.79
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +2
Query: 17 VRALKARYDSALRNLKTEHR*REEFLEKQLRTIARPHKQTDDAQSACGRLTDV-KRLTTE 193
V L A D + + H + + LE Q+ + + + + + D KRL TE
Sbjct: 568 VEELAASSDRQAQVARDNHAHKLKALETQILNLKKKQENQVEVLKQKQKSEDAAKRLKTE 627
Query: 194 VQSLKAAYKGLQEKLK 241
+Q +KA LQ+K+K
Sbjct: 628 IQCIKAQKVQLQQKMK 643
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +3
Query: 264 TRG*AQGPGGETRGLGASRTKGCTCAMP*TAGGNQIEGADNSTAETRGGKIDRATKRSG- 440
T G + GGE+ GA+ G GG E A +AET GG+ A SG
Sbjct: 270 TSGGSAETGGESASGGAASGAGAASGASAKTGGESGEAASGGSAET-GGESASAGAASGG 328
Query: 441 -AENGVRS 461
AE G S
Sbjct: 329 SAETGGES 336
>At1g75310.1 68414.m08748 DNAJ heat shock N-terminal domain-containing
protein low similarity to SP|Q27974 Auxilin {Bos taurus};
contains Pfam profile PF00226: DnaJ domain
Length = 1448
Score = 29.5 bits (63), Expect = 1.8
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +2
Query: 11 ETVRALKARYDSALRNLKTEHR*REEFLEKQLRTIARPHKQTDDAQSACGRLTDVKRLTT 190
E ++ KAR + R+ +T R E EK+LR + +QT+ + A DVKR ++
Sbjct: 1307 EPIQRCKARSE---RHQRTSDRAAEALAEKKLRDLKTQKEQTERNRLAEALDADVKRWSS 1363
Query: 191 -EVQSLKAAYKGLQEKLKVAQSG 256
+ +L+A LQ L A+SG
Sbjct: 1364 GKENNLRALISTLQYILG-AESG 1385
>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
myosin heavy chain [Arabidopsis thaliana]
gi|602328|emb|CAA84067.
Length = 1242
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 161 RLTDVKRLTTEVQSLKAAYKGLQEKLKVAQSGSAHARLSSGPRRR 295
R T+++ LT EV+ LKA + +++ +++ A AR G RRR
Sbjct: 1078 RDTEIESLTAEVEMLKALLQVEKQRADISERKCAEAR-ELGERRR 1121
>At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 858
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 343 CHKLLEEIKSK-ERTIALLKREAAKSTAQQNDQAQRMECGANEFTRKL 483
C + EE+K++ ++ + L+ +A+ +D+A+ +E AN+ RKL
Sbjct: 124 CKRQTEEVKNQWKKALTLVANMLGFDSAKWDDEAKMIEEIANDVLRKL 171
>At5g46490.1 68418.m05724 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 357
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 343 CHKLLEEIKSK-ERTIALLKREAAKSTAQQNDQAQRMECGANEFTRKL 483
C + EE+K++ ++ + L+ +A+ +D+A+ +E AN+ RKL
Sbjct: 124 CKRQTEEVKNQWKKALTLVANMLGFDSAKWDDEAKMIEEIANDVLRKL 171
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 352 VYGIAHVHPFVRLAPRPRVSPPGP*AQP 269
V+G +H H + P P SPP P A P
Sbjct: 1125 VFGTSHQHMSLSSPPLPSSSPPPPPAPP 1152
>At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma
membrane-type / Ca2+-ATPase, isoform 4 (ACA4) identical
to SP|O22218 Calcium-transporting ATPase 4, plasma
membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4)
{Arabidopsis thaliana}
Length = 1030
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 83 EEFLEKQLRTIARPHKQTDDAQSACGRLTDVKRLTTEVQSLKAAYK-GLQEKLKVAQSGS 259
E F + LRT+ +K D+A S G L D V +K + G++E ++ Q+
Sbjct: 611 EGFASEALRTLCLVYKDLDEAPS--GELPDGGYTMVAVVGIKDPVRPGVREAVQTCQAAG 668
Query: 260 AHARLSSG 283
R+ +G
Sbjct: 669 ITVRMVTG 676
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 346 HKLLEEIKSKERTIALLKREAAKSTAQQN--DQAQRM 450
HKL E I +KE +A+ + E AKS A + A RM
Sbjct: 332 HKLEEAILAKEAAMAIAENEKAKSRAAMEALEAAHRM 368
>At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--tRNA
ligase (THRRS) identical to SP|O04630 Threonyl-tRNA
synthetase, mitochondrial precursor (EC 6.1.1.3)
(Threonine--tRNA ligase) (ThrRS) {Arabidopsis thaliana}
Length = 709
Score = 27.1 bits (57), Expect = 9.7
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +2
Query: 434 IRRREWSAEPMNSPGNCVLIR 496
I ++E+ +PMN PG+C++ +
Sbjct: 395 IEKQEFGLKPMNCPGHCLIFQ 415
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 340 QCHKLLEEIKSKERTIALLKREAAKSTAQQN 432
Q + L EE+KS+ +A L++E AK+ +QN
Sbjct: 604 QKNLLQEELKSQRDKVAGLQQEVAKAKTRQN 634
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 340 QCHKLLEEIKSKERTIALLKREAAKSTAQQN 432
Q + L EE+KS+ +A L++E AK+ +QN
Sbjct: 604 QKNLLQEELKSQRDKVAGLQQEVAKAKTRQN 634
>At1g80990.1 68414.m09504 XH domain-containing protein contains Pfam
profile PF03469: XH domain
Length = 229
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 161 RLTDVKRLTTEVQSLKAAYKGLQEKL 238
RL+D +RLT E++SLK + K +K+
Sbjct: 3 RLSDFERLTAEIKSLKESLKEKIDKV 28
>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
(HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
(GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
17 (19), 7995 (1989))
Length = 157
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/45 (22%), Positives = 26/45 (57%)
Frame = +1
Query: 361 EIKSKERTIALLKREAAKSTAQQNDQAQRMECGANEFTRKLRVDQ 495
+++ ++ I + E + ++ND+ R+E + +FTR+ R+ +
Sbjct: 76 KVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPE 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,163,852
Number of Sequences: 28952
Number of extensions: 251532
Number of successful extensions: 821
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -