Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0712.Seq
         (571 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    27   0.15 
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    27   0.15 
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    24   1.0  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    24   1.0  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    24   1.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   3.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.2  
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    21   5.6  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    21   5.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.4  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 228 VRLWQTHRRKRLTTEVQSLKAAYKGLQEKLKVAQSA 335
           +++W  +RR +L  E+Q++K   +  QEK   AQ A
Sbjct: 267 IKIWFQNRRMKLKKEIQAIKELNE--QEKQAQAQKA 300


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 228 VRLWQTHRRKRLTTEVQSLKAAYKGLQEKLKVAQSA 335
           +++W  +RR +L  E+Q++K   +  QEK   AQ A
Sbjct: 49  IKIWFQNRRMKLKKEIQAIKELNE--QEKQAQAQKA 82


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   ESLLTKMKSLVERIRLENTTLKKSLDIERSR 96
           E LLT+ K L E+   E     K  D+E+ R
Sbjct: 52  EKLLTEQKELAEKEEAETLKRYKLNDLEKRR 82


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   ESLLTKMKSLVERIRLENTTLKKSLDIERSR 96
           E LLT+ K L E+   E     K  D+E+ R
Sbjct: 212 EKLLTEQKELAEKEEAETLKRYKLNDLEKRR 242


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   ESLLTKMKSLVERIRLENTTLKKSLDIERSR 96
           E LLT+ K L E+   E     K  D+E+ R
Sbjct: 212 EKLLTEQKELAEKEEAETLKRYKLNDLEKRR 242


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 421 NAINCWRKSNRRSGQ*HC*NERRQNRPRN-KRSGAENGVR 537
           N+ N WRK+N    + +  +  +    RN K SG   GV+
Sbjct: 383 NSNNHWRKNNPNDNRNNTSSRAQGETSRNSKNSGNGGGVQ 422


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
 Frame = -3

Query: 230  DCASSV-CLWGLAMVLNC 180
            DC   + CLWG   V NC
Sbjct: 1290 DCTRYLHCLWGKYEVFNC 1307


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 138 IPESAVITGF-KCSDSAPLDVERLLQ 64
           IP+ A+ITG  KC+D   + VE++++
Sbjct: 64  IPD-ALITGCRKCNDHQKVSVEKVIR 88


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 138 IPESAVITGF-KCSDSAPLDVERLLQ 64
           IP+ A+ITG  KC+D   + VE++++
Sbjct: 64  IPD-ALITGCRKCNDHQKVSVEKVIR 88


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -3

Query: 557 SW*IHWLRTPFSAPDRLLRGRFCRLSF 477
           +W  HWL         +L+  +C+ SF
Sbjct: 361 AWQSHWLNKGAEQAKNVLKCVWCKQSF 387


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,502
Number of Sequences: 336
Number of extensions: 1993
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)