Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0712.Seq
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 29 0.48
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 29 0.63
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.1
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.9
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 27 2.6
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 27 2.6
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 27 2.6
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 3.4
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 26 3.4
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 26 3.4
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 3.4
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 3.4
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 26 4.5
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 5.9
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc... 25 5.9
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 7.8
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 7.8
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.48
Identities = 17/59 (28%), Positives = 33/59 (55%)
Frame = +1
Query: 67 KKSLDIERSRVRALKARYDSALRNLKTEHRKREEFLEKQLRTIARPHKQTDDAQSACGR 243
K +LD ++ RAL+ YD+ LR +T R++ ++Q R + R +++ + + A R
Sbjct: 215 KTALDDLYNQRRALQREYDTQLRAFRTYEREQRAKRQEQFR-LERENREKEKRRIAAQR 272
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 28.7 bits (61), Expect = 0.63
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 5/29 (17%)
Frame = +1
Query: 10 LLTKMKSLVERIRLENTT-----LKKSLD 81
L+T++K L+ERI +EN T LKK++D
Sbjct: 44 LITRIKQLIERIAIENNTTSWEALKKAID 72
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 240 QTHRRKRLTTEVQSLKAAYKGLQEKLKVA 326
Q R LTTE QSL+ A LQE+ K+A
Sbjct: 110 QNKRFDALTTENQSLRRANSELQEQSKIA 138
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 27.1 bits (57), Expect = 1.9
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = +3
Query: 420 QCHKLLEEIKSKERTIALLKREAAKST 500
QCH+L+EE++ ++ + +RE +++T
Sbjct: 427 QCHQLIEELRDEKHQHDIEEREGSENT 453
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 26.6 bits (56), Expect = 2.6
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +1
Query: 19 KMKSLVERIR-LENTT-----LKKSLDIERSRVRALKARYDSALRNLKTEHRKREEFLEK 180
K K L E+++ LEN L + + I+R Y+ N K EH ++ LEK
Sbjct: 75 KEKPLDEKVKELENANKTLSDLVRRIQIQRDEAEQKAEIYNRDALNTKQEHLDIKKRLEK 134
Query: 181 QLRTIARPHKQTDDAQ 228
T+ + ++ ++ Q
Sbjct: 135 SDETVCKLKEENENLQ 150
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 64 LKKSLDIERSRVRALKARYDSALRNLKTEHRKREEFLEKQLRTI 195
L++SL++ERSR L+ ++ ALR K E + +K + ++
Sbjct: 199 LEESLEVERSRTSELQEQFSVALRE-KAEAEANKIVSQKGMESL 241
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 64 LKKSLDIERSRVRALKARYDS-ALRNLKTEHRKREEFLEKQLRTIAR 201
LK ++ R R +K + DS ALR +E R+EF+EK L+ I++
Sbjct: 222 LKNGRKRQKKRAR-MKEKLDSKALRT--SEDAARDEFIEKMLKPISQ 265
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 441 PPAVYGIAHVHPFVRLAPRPRVSPPGP 361
PP GI + HP VR P+P SP P
Sbjct: 151 PPNQIGI-NAHPAVRQTPQPAPSPNTP 176
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 538 SELHSLRLIVCCAVDFAASRFSSAIVRSFDLISSSS 431
+ LH LR ++C +DF+ ++ ++ I+ F L S
Sbjct: 392 TSLHLLRTLICMKLDFSNAQLAAKILFHFLLFDIGS 427
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 3.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 513 IRRREWSSEPMNSPGNCVL 569
I + +++ +PMN PG+CV+
Sbjct: 369 IEKEKYALKPMNCPGHCVM 387
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +3
Query: 408 DARAQCHKLLEEIKSKERTIALLKREAAKSTAQQTIRRREWSSEPMNS 551
D Q + L + A + AKS+ ++T RRR + P S
Sbjct: 134 DPSRQLNSLAARVSPASNASATASKNGAKSSKRKTTRRRRTPNRPKKS 181
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 3.4
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 34 VERIRLENTTLKKS---LDIERSRVRALKARYDSALRNLKTEHRKREEFLEKQLRTIARP 204
+ RI + ++L KS LD +S + ALKA+ S K E + EE L +
Sbjct: 227 LSRIEMLESSLAKSNSLLDSSKSEMEALKAKSISDATKHKNEIFQLEEKLHEASHEAEIS 286
Query: 205 HKQTDDAQS 231
K+ +DA++
Sbjct: 287 IKKLNDAEN 295
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 227 CASSVCLWGLAMVLNCFSKNSSRFLCSVF 141
C + GL M CFS+ S F CS +
Sbjct: 548 CHFLIITIGLVMFCKCFSEMSPLFACSTY 576
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 60 DLEEVARHRAEQSQST*SPL*QRSQESKD*TQEARRVLRKTVENHR 197
+LEE+AR + S S + +E K+ +EA+R+ + E R
Sbjct: 689 ELEEIARRNVDPMVSELSERAAQERERKEQAKEAKRLKKLAKEEKR 734
>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
Sen34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 5.9
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 34 VERIRLENTTLKKSLDIERSRVRALKARYDSALRNLKTEHRKREEFLEKQLRTI 195
V + LENTT D+++ + YD + K E+ K+ E ++K RT+
Sbjct: 78 VHKQLLENTTKD---DVKQCLKKRQSLAYDQMIAAKKKENEKKIEIMKKLGRTL 128
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 43 IRLENTTLKKSLDIERSRVRALKARYDSALRNLKTEHRKREEFLEKQLRTIAR 201
I +T ++ L + + L + L+ + R E+FLEK+ R AR
Sbjct: 286 ITQRHTDIESRLQKMQDNAKELDESRRKKIELLEKKERDEEQFLEKERRDTAR 338
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 455 LRFDFLQQFMALRTCIPSCGLLQGRVSRRLGPELSRACALRRL 327
LRF FL F+ + CI + RV + +R + R+L
Sbjct: 172 LRFGFLSLFIIMAVCIQYYRICDRRVKVNFKDDYTRYLSTRKL 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,737
Number of Sequences: 5004
Number of extensions: 35337
Number of successful extensions: 136
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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