Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0712.Seq
(571 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g38150.1 68418.m04598 expressed protein 31 0.72
At4g32030.1 68417.m04560 expressed protein 31 0.72
At1g67890.1 68414.m07752 protein kinase family protein contains ... 30 0.95
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 29 2.2
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 29 2.9
At4g39610.1 68417.m05599 expressed protein contains Pfam profile... 28 3.8
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 28 5.0
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L... 27 6.7
At3g10730.1 68416.m01292 sad1/unc-84-like 2 family protein conta... 27 6.7
At3g05270.1 68416.m00575 expressed protein similar to endosome-a... 27 6.7
At3g01810.1 68416.m00123 expressed protein 27 6.7
At3g22790.1 68416.m02873 kinase interacting family protein simil... 27 8.8
At2g45290.1 68415.m05637 transketolase, putative strong similari... 27 8.8
At2g07020.1 68415.m00803 protein kinase family protein contains ... 27 8.8
>At5g38150.1 68418.m04598 expressed protein
Length = 574
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 19 KMKSLVERIRLENTTLKKSLDIERSRVRALKARYDSALRNLKTEHR--KREEFLEKQLRT 192
K++ L +I +E + L+ + I R+ +L + +L +K K+EEFL K+ +T
Sbjct: 313 KIEKLNSKILIEKSKLEV-VSIAEERISSLAENFVGSLEKIKKSRNAAKKEEFLFKEEKT 371
Query: 193 IARPHKQ 213
+ + Q
Sbjct: 372 VTKAETQ 378
>At4g32030.1 68417.m04560 expressed protein
Length = 253
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 13 LTKMKSLVERIRLENTTLKKSLDIERSRVRALKARYDSALRNLKTEHRKR 162
L K KS E EN LK+ LD+E+ + +L+A +D +NL+ + KR
Sbjct: 143 LKKRKSSFELKNEENLKLKERLDLEK-EIASLRATFDE--QNLRNQKLKR 189
>At1g67890.1 68414.m07752 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 765
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 429 KLLEEIKSKERTIALLKREAAKSTAQQTIRRREWSSEP 542
KLL++I+ E + LKRE +K I+RR SS P
Sbjct: 10 KLLKKIRELEESQEDLKREMSKLKVSAEIKRRSHSSSP 47
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 15 HQNEEPRRKDKAGEHDLEEVARHRAEQSQST*SPL*QRSQES 140
HQ ++ +++ + +H L ++ H +Q Q+ SPL Q Q++
Sbjct: 740 HQQQQQQQQQQQQQHQLTQLQHHHQQQQQA--SPLNQMQQQT 779
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +1
Query: 1 DESLLTKMKSLVERIRLE-NTTLKKSLDIERSRVRALKARYDSALRNLKTEHRKREEFLE 177
+E + K+KS +E ++ E N LKK D SRV+ L L +L++ ++ EE +
Sbjct: 406 NEKEVEKLKSELETVKEEKNRALKKEQD-ATSRVQRLSEEKSKLLSDLESS-KEEEEKSK 463
Query: 178 KQLRTIA 198
K + ++A
Sbjct: 464 KAMESLA 470
>At4g39610.1 68417.m05599 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 264
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 22 MKSLVERIRLENTTLKKSLDIERSRVRALKARYDSALRNLKTEHRKREEFLEKQLRTI 195
+ SLV + ++ TTL+K L R+ AL+ N ++ K+ + LE+ L T+
Sbjct: 120 LPSLVVELAMQTTTLQKELSTGMVRI-ALETEKQPRADNNNSKTEKKTDILEEPLWTM 176
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 27.9 bits (59), Expect = 5.0
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Frame = +1
Query: 67 KKSLDIER---SRVRALKARYDSALRNLKTEHRKREEFLEKQL----RTIARPHKQTDDA 225
K LD +R SR R +++ R+ E R R++ +++ R+ + KQ D
Sbjct: 775 KNKLDEDRNTGSRRRRSRSKSVEGKRSYNKETRSRDKKSKRRSGRRSRSPSSEGKQGRDI 834
Query: 226 QSACGRLTDVKD*QQRFSL*KQLIRVFKKNLRSHNRRSAHARLSSGPRRRDTR 384
+S+ G + K +R S + + KKN R H RL S RD R
Sbjct: 835 RSSPGYSDEKKSRHKRHSRSRS---IEKKNSSRDKRSKRHERLRSSSPGRDKR 884
Score = 27.5 bits (58), Expect = 6.7
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 8/163 (4%)
Frame = +1
Query: 1 DESLLTKMKSLVERIRLENTTLKKSLDIERSRVRALKARYDSALRNLKTEHRKREEFLEK 180
++S K KS E ++ + +RS+ R D A K +HR+R +
Sbjct: 663 EDSADIKDKSRDEELKHHKKRSRSRSREDRSKTRDTSRNSDEA----KQKHRQRSR--SR 716
Query: 181 QLRTIARPHKQTDDAQ----SACGRLTDVKD*QQRFSL*KQLIRVFKKNLRSHNRRSAHA 348
L H+ D AQ ++ K + + + ++ R ++L + NR S
Sbjct: 717 SLENDNGSHENVDVAQDNDLNSRHSKRRSKSLDEDYDMKERRGRSRSRSLETKNRSSRKN 776
Query: 349 RL----SSGPRRRDTRPWSKPHEGMHVRNAINCWRKSNRRSGQ 465
+L ++G RRR +R S + + + + +KS RRSG+
Sbjct: 777 KLDEDRNTGSRRRRSRSKSVEGKRSYNKETRSRDKKSKRRSGR 819
>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
PROTEIN KIF4, Homo sapiens, EMBL:AF179308
Length = 1051
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 255 KRLTTEVQSLKAAYKGLQEKLKVAQSAE 338
KRL TE+Q +KA LQ+K+K Q AE
Sbjct: 622 KRLKTEIQCIKAQKVQLQQKMK--QEAE 647
>At3g10730.1 68416.m01292 sad1/unc-84-like 2 family protein contains
1 transmembrane domain; similar to Sad1 unc-84 domain
protein 2 (GI:6538749) [Homo sapiens]; similar to
Sad1/unc-84-like protein 2 (Fragment)
(Swiss-Prot:Q9UH99) [Homo sapiens]
Length = 455
Score = 27.5 bits (58), Expect = 6.7
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Frame = +1
Query: 10 LLTKMKSLVERIRLENTTLKKS-LDIERSRVRA-LKARYDSALRNLKTEHRKRE---EFL 174
LL + L+ ++ L++++L S IE V + L++R + +KT + + EFL
Sbjct: 120 LLVGLIQLIRKLTLKDSSLSSSNFPIETEMVLSELESRISAVDGLVKTTTKMMQVQVEFL 179
Query: 175 EKQLRTIARPHKQTDDAQSA 234
+K++ + +R +QT D+ S+
Sbjct: 180 DKKMDSESRALRQTIDSTSS 199
>At3g05270.1 68416.m00575 expressed protein similar to
endosome-associated protein (EEA1) (GI:1016368) [Homo
sapiens]; similar to smooth muscle myosin heavy chain
(GI:4417214) [Homo sapiens; contains Pfam profile
PF05911: Plant protein of unknown function (DUF869)
Length = 615
Score = 27.5 bits (58), Expect = 6.7
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 4 ESLLTKMKSLVERIRLENTTLK-KSLDIERSRVRALKARYDSALRNLKTEHRKREEFLEK 180
E++ +++K + E+ LK KSL+ + RAL A+++S L+ E K ++ LE
Sbjct: 502 EAIESRLKDV--EAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELEH 559
Query: 181 QLRTIARPH 207
T P+
Sbjct: 560 HQETEPAPN 568
>At3g01810.1 68416.m00123 expressed protein
Length = 921
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +1
Query: 316 LRSHNRRSAHARLSSGPRRRDTRPWSKPHEGMHVRNAINCWRKSNRRSG 462
L S NRR + ++ D +PW +R+ + W +R SG
Sbjct: 5 LSSKNRRCSSVQVDYLIHIHDIKPWPPSQSLRSLRSVVIQWENGDRNSG 53
>At3g22790.1 68416.m02873 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 27.1 bits (57), Expect = 8.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 19 KMKSLVERIRLENTTLKKSLDIERSRVRALKARYDSALRNLKTE---HRKREEFLEKQLR 189
K+K +E+ E L D E + LK +S ++ L E HR REEFL +L+
Sbjct: 1202 KLKGNLEKRNSELCDLAGRQDEEIKILSNLKENLESEVKLLHKEIQEHRVREEFLSSELQ 1261
>At2g45290.1 68415.m05637 transketolase, putative strong similarity
to transketolase 1 [Capsicum annuum] GI:3559814;
contains Pfam profiles PF02779: Transketolase, pyridine
binding domain, PF02780: Transketolase, C-terminal
domain, PF00456: Transketolase, thiamine diphosphate
binding domain
Length = 741
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +2
Query: 365 PGGETRGLGASRTKGCTCAMP*TAGGNQIEGADNSTAETRGGKIDRATNDQAQRMEFGAN 544
PG TR L A+P GG+ + N T G +AT ++ + + FG
Sbjct: 429 PGDATRNLSQQCLNALAKAVPGFLGGSADLASSNMTMLKAFGNFQKATPEE-RNLRFGVR 487
Query: 545 E 547
E
Sbjct: 488 E 488
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 426 HKLLEEIKSKERTIALLKREAAKSTA 503
HKL E I +KE +A+ + E AKS A
Sbjct: 332 HKLEEAILAKEAAMAIAENEKAKSRA 357
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,696,316
Number of Sequences: 28952
Number of extensions: 205728
Number of successful extensions: 794
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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