Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0711.Seq
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.7  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    23   3.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.3  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 104 FSRQLRHDLRSI-N*KEESSCFISNSTSNEC 15
           F R +R + + +   K+E SC I  +  N+C
Sbjct: 62  FKRSIRRNRQYVCKAKDEGSCIIDKTHRNQC 92


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 104 FSRQLRHDLRSI-N*KEESSCFISNSTSNEC 15
           F R +R + + +   K+E SC I  +  N+C
Sbjct: 62  FKRSIRRNRQYVCKAKDEGSCIIDKTHRNQC 92


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 145 LSASSNALRRFDSDSPASLDMISGPLIKK 59
           L    N L + D DSPA   +++ P  KK
Sbjct: 109 LQLDENKLDKKDDDSPALRALLTRPQAKK 137


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 30  AVANETGAFFFLINGPE 80
           A+A + G+F  L+ GPE
Sbjct: 70  ALAEQLGSFITLVGGPE 86


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 277 GRLLHAIQSVNNCETIRLSTS 215
           GRL+  + SV+  E +RLS S
Sbjct: 375 GRLVLTVSSVSKPEALRLSGS 395


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 702 PADVGPRHVGNFHHCLT 652
           P  VGPR  G+ + CL+
Sbjct: 288 PGFVGPRCEGDINECLS 304


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 292 HHDHVGRLLHAIQSVNN 242
           HH H G  +HA   V N
Sbjct: 322 HHHHAGHHIHAQHHVVN 338


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,218
Number of Sequences: 336
Number of extensions: 3109
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)