Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0711.Seq
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 161 1e-40
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 100 5e-22
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 97 3e-21
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 89 5e-19
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 88 1e-18
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 86 5e-18
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 86 6e-18
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 85 1e-17
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 81 1e-16
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 81 2e-16
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 79 5e-16
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 78 2e-15
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 76 7e-15
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 75 9e-15
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 75 1e-14
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 74 3e-14
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 72 8e-14
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 72 1e-13
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 71 2e-13
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 59 8e-10
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 40 4e-04
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.3
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 28 1.7
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 27 3.0
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 6.9
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr... 26 6.9
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 9.2
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 161 bits (391), Expect = 1e-40
Identities = 77/84 (91%), Positives = 84/84 (100%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARAVANETGAFFFLINGPEIMSK+AGESESNLRKAFEEA+KNSPAIIFIDE+D
Sbjct: 268 GTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEID 327
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
+IAPKREKT+GEVERR+VSQLLTL
Sbjct: 328 SIAPKREKTNGEVERRVVSQLLTL 351
Score = 160 bits (389), Expect = 2e-40
Identities = 73/89 (82%), Positives = 83/89 (93%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DGMK S+V+VMAATNRPNSIDPALRRFGRFDRE+D+GIPD TGRLEILRIHTKN
Sbjct: 348 LLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKN 407
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCS 508
MKL DDVDLEQIAAE+HG+VG+DLASLCS
Sbjct: 408 MKLADDVDLEQIAAETHGYVGSDLASLCS 436
Score = 132 bits (318), Expect = 7e-32
Identities = 62/85 (72%), Positives = 75/85 (88%)
Frame = +1
Query: 508 EAALQQIREKMDLIDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTW 687
EAA+QQIREKMD+IDL++D+IDAEVL+SL V+MDNFR+A+ S+PSALRETVVEVPNV W
Sbjct: 437 EAAMQQIREKMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSALRETVVEVPNVRW 496
Query: 688 TDIGGLEGVKRELQELVQYPVEHPD 762
DIGGLE VKREL+E VQ PV + +
Sbjct: 497 EDIGGLEEVKRELRETVQMPVMYAE 521
Score = 85.4 bits (202), Expect = 8e-18
Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+A+ANE A F + GPE++S GESESN+R F++A +P ++F+DELD
Sbjct: 541 GTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELD 600
Query: 183 AIAPKREKTHGEV--ERRIVSQLLT 251
+IA R + G+ R+V+QLLT
Sbjct: 601 SIAKARGASAGDSGGGDRVVNQLLT 625
Score = 77.8 bits (183), Expect = 2e-15
Identities = 36/90 (40%), Positives = 54/90 (60%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DG+ +V V+ ATNRP+ IDPAL R GR D+ I + +PD R IL+ ++
Sbjct: 623 LLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRH 682
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCSR 511
+ +DVDL +A +HG GADL + R
Sbjct: 683 TPVAEDVDLRAVAKATHGFSGADLEFVVQR 712
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 679 VTWTDIGGLEGVKRELQELVQYPVEHP 759
V + DIGG +++ELV+ P+ HP
Sbjct: 221 VGYDDIGGCRRQMAQIRELVELPLRHP 247
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 99.5 bits (237), Expect = 5e-22
Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Frame = +2
Query: 239 TVIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 418
T++ LDGM + V+V+AATNRPNSID ALRR GR ++EI+IGIPD + RL+I+++
Sbjct: 402 TLLTLLDGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIKLLLS 461
Query: 419 NMKLG-DDVDLEQIAAESHGHVGADLASLCSRQPCSRFVRRWISLTSRT 562
+ +D LE +A+ +H +VGADLA++ R+ R ++R ISL T
Sbjct: 462 GVPNEINDAQLEDLASRTHAYVGADLAAVV-REAALRAIKRTISLQKDT 509
Score = 97.5 bits (232), Expect = 2e-21
Identities = 47/84 (55%), Positives = 60/84 (71%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++ RAVA E A F I+GP ++ K GE+ES LRK FE+A + P+IIFIDE+D
Sbjct: 323 GTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEID 382
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
A+APKR + E E R V+ LLTL
Sbjct: 383 ALAPKRTEDVSEAESRAVATLLTL 406
Score = 85.0 bits (201), Expect = 1e-17
Identities = 39/88 (44%), Positives = 62/88 (70%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ LDG++ +V+V+AATNRP+ IDPAL R GR DR + +G P+ R +I++I +
Sbjct: 670 LLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEK 729
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLC 505
MK +DVDL+ IA ++ G GA++ +LC
Sbjct: 730 MKFAEDVDLDLIAEKTEGCSGAEVVALC 757
Score = 72.5 bits (170), Expect = 6e-14
Identities = 34/82 (41%), Positives = 52/82 (63%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G KT+ A+A+A ETG F + GPE+ K GESE +R+ F++A + SP++IF DE+D
Sbjct: 592 GCSKTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEID 651
Query: 183 AIAPKREKTHGEVERRIVSQLL 248
A+ R + + R+V+ LL
Sbjct: 652 ALTANRGEDNS--SDRVVAALL 671
Score = 64.5 bits (150), Expect = 2e-11
Identities = 34/83 (40%), Positives = 53/83 (63%)
Frame = +1
Query: 508 EAALQQIREKMDLIDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTW 687
EAAL+ I+ I L+ D ++ AV MD+ +A++ SA+RE ++E PNV W
Sbjct: 493 EAALRAIKRT---ISLQKDTSGLDIFG--AVQMDDLEFALSSVRQSAMREFMMESPNVHW 547
Query: 688 TDIGGLEGVKRELQELVQYPVEH 756
+DIGG E VK++L+E V++P+ H
Sbjct: 548 SDIGGQEEVKQKLKESVEWPLTH 570
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 96.7 bits (230), Expect = 3e-21
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKT++A A+ANE G F I+ P I+S ++GESE +R+ FEEA +P ++FIDE+D
Sbjct: 218 GCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFIDEID 277
Query: 183 AIAPKREKTHGEVERRIVSQLLT 251
A+ PKRE E+ERRIV+Q LT
Sbjct: 278 AVTPKRESAQREMERRIVAQFLT 300
Score = 89.4 bits (212), Expect = 5e-19
Identities = 42/83 (50%), Positives = 58/83 (69%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKTL+A+AVANE+ A F I GPE+++K GESE +R+ F A +SP +IF DELD
Sbjct: 536 GCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFLRARASSPCVIFFDELD 595
Query: 183 AIAPKREKTHGEVERRIVSQLLT 251
A+ P+R+ + E R+V+ LLT
Sbjct: 596 AMVPRRDDSLSEASSRVVNTLLT 618
Score = 82.6 bits (195), Expect = 6e-17
Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = +2
Query: 239 TVIDALDGMKKSSH-VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHT 415
T +D L K V+V+ ATNRP+S+D ALRR GRFDREI + +P R +ILR
Sbjct: 300 TCMDELSFEKTDGKPVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMA 359
Query: 416 KNMKLGDDVDLEQIAAESHGHVGADLASL 502
K +KL D D Q+A ++ G+VGADL +L
Sbjct: 360 KGLKLSGDFDFRQLAKQTPGYVGADLKAL 388
Score = 73.7 bits (173), Expect = 3e-14
Identities = 39/90 (43%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Frame = +2
Query: 239 TVIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 418
T++ LDG+ S V V+AATNRP+ IDPA+ R GR D+ + + +PDA R+EIL+ TK
Sbjct: 615 TLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTK 674
Query: 419 NMKLGDDVDLEQIAAESH--GHVGADLASL 502
L ++V+L+ + + GADLA+L
Sbjct: 675 QTPLHEEVNLDVLGRDERCSNFSGADLAAL 704
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = +1
Query: 547 IDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIGGLEGVKREL 726
++ D + E L LA+ +F A+ K PS+ RE VP V+W +IG L+ ++ EL
Sbjct: 445 LNAHPDPLSPEELEPLAICPQDFIEALAKVQPSSKREGFATVPGVSWNNIGALKSIRVEL 504
Query: 727 QELVQYPVEHPD 762
Q + P++ P+
Sbjct: 505 QMAIVQPIKRPE 516
Score = 36.7 bits (81), Expect = 0.004
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +1
Query: 547 IDLEDDQ--IDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPN-VTWTDIGGLEGVK 717
ID ED++ + E + A D R + T S E E P+ ++ +DIGGL+
Sbjct: 126 IDGEDEKKSVGQESITGSAKRKD--RRSKTNGSKRQKAEANREPPSDISLSDIGGLDDCI 183
Query: 718 RELQELVQYPVEHPD 762
EL ELV P++HP+
Sbjct: 184 NELLELVAMPIKHPE 198
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 89.4 bits (212), Expect = 5e-19
Identities = 45/84 (53%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+AVA E F I GPE+++ GESE+N+R FE+A +SP +IF DELD
Sbjct: 698 GTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELD 757
Query: 183 AIAPKR--EKTHGEVERRIVSQLL 248
+IAP R G V R+VSQLL
Sbjct: 758 SIAPHRGNSSDSGNVMDRVVSQLL 781
Score = 68.1 bits (159), Expect = 1e-12
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Frame = +2
Query: 254 LDGMKKSS--HVIVMAATNRPNSIDPALRRFGRFDREIDIGI-PDATGRLEILRIHTKNM 424
LD + K + +V V+ ATNRP+ +DP+L R GRFD+ + +GI + +LR TK
Sbjct: 784 LDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTF 843
Query: 425 KLGDDVDLEQIAAESH-GHVGADLASLCSRQPCSRFVRR 538
KL + +DL +IA H GAD+ +LCS S R+
Sbjct: 844 KLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKRK 882
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 658 TVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
T+ VP V W DIGGLE K L++ +Q P++ P+
Sbjct: 645 TIFTVPKVNWDDIGGLEEAKTVLRDTLQLPLQFPE 679
Score = 32.3 bits (70), Expect = 0.080
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +3
Query: 6 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDA 185
TGKT VA+ A F I+ E A E+ L + K+ AIIF+ +LD
Sbjct: 433 TGKTKAVEEVASLFSAPVFTISSYEFADATADHLEAKLDMFVQNVVKSPCAIIFVKDLDV 492
Query: 186 IA 191
++
Sbjct: 493 LS 494
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 88.2 bits (209), Expect = 1e-18
Identities = 39/87 (44%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG 433
+DG S H++V A TNRP+ +DPAL R GRFDR+I I PD GR +I ++H K++K
Sbjct: 427 MDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAA 486
Query: 434 DDVDL--EQIAAESHGHVGADLASLCS 508
D++DL +++A + G GAD+ ++C+
Sbjct: 487 DNIDLIAKRLAVLTSGFTGADIMNVCN 513
Score = 64.9 bits (151), Expect = 1e-11
Identities = 31/66 (46%), Positives = 39/66 (59%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+A A E F ++G E + G S +R F A KN+P IIFIDE+D
Sbjct: 339 GTGKTLLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEID 398
Query: 183 AIAPKR 200
AI R
Sbjct: 399 AIGKAR 404
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 86.2 bits (204), Expect = 5e-18
Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +2
Query: 239 TVIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 418
T++ +DGM+ VI++ ATNRP+++DPALRR GRFDRE +PD R +I+ IHT+
Sbjct: 394 TLLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPDRDARKKIIEIHTR 453
Query: 419 NMKLGDDVDL-EQIAAESHGHVGADLASLCSRQPCSRFVRRWISLTSRTIRL 571
N L +A +S G+ GADL +LC+ + R + L T RL
Sbjct: 454 NWDPPVPEWLCSMLAEKSKGYGGADLRALCTEAALNSIKRTYPQLYRSTKRL 505
Score = 72.5 bits (170), Expect = 6e-14
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIF 167
GTGKTL+ARA+A + F++ G + +SK GE+E LR FEEA P+IIF
Sbjct: 310 GTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIF 369
Query: 168 IDELDAIAPKREKTHGEVERRIVSQLLTL 254
DE+D +AP R ++ IVS LL L
Sbjct: 370 FDEIDGLAPVRSSKQEQIHASIVSTLLAL 398
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 85.8 bits (203), Expect = 6e-18
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Frame = +2
Query: 254 LDGMKKS---SH-VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
LDG K+ +H V+ + ATN P S+DPAL R GRFDR I + +PD GRL IL HT++
Sbjct: 394 LDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRH 453
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCSR 511
+ LG DVDL IA + G GADLA+L ++
Sbjct: 454 VPLGKDVDLSIIARGTSGFAGADLANLINQ 483
Score = 70.5 bits (165), Expect = 2e-13
Identities = 36/82 (43%), Positives = 48/82 (58%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++ARAVA E FF ++G + G +R+ F A K +P+IIFIDELD
Sbjct: 310 GTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELD 369
Query: 183 AIAPKREKTHGEVERRIVSQLL 248
AI KR R+ ++QLL
Sbjct: 370 AIGQKRNARDAAHMRQTLNQLL 391
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 85.0 bits (201), Expect = 1e-17
Identities = 40/89 (44%), Positives = 56/89 (62%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+I LDG ++ V+ ATNRPN++D AL R GR DR+++ G+PD GR ILRIH K+
Sbjct: 306 LITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKS 365
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCS 508
M + D+ E IA GA+L S+C+
Sbjct: 366 MAIDKDIRWELIARLCPSQTGAELRSVCT 394
Score = 64.5 bits (150), Expect = 2e-11
Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL ARAVAN T A F + G E++ K GE +R+ FE A IIF DE+D
Sbjct: 223 GTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEID 282
Query: 183 AIAPKR--EKTHGEVE-RRIVSQLLT 251
AI R + G+ E +R + +L+T
Sbjct: 283 AIGGARFDDGAGGDNEVQRTMLELIT 308
Score = 35.5 bits (78), Expect = 0.009
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +1
Query: 544 LIDLEDDQIDAEVLNSLAVSMDNFRYAMT-----KSSPSALRETVVEVPNVTWTDIGGLE 708
++ L + ++ + V D +YA+ K PS V E P+VT+ D+GG +
Sbjct: 126 VVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCK 185
Query: 709 GVKRELQELVQYPVEHPD 762
L+E+V+ P+ P+
Sbjct: 186 EQIERLREVVELPLLSPE 203
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 81.4 bits (192), Expect = 1e-16
Identities = 41/110 (37%), Positives = 65/110 (59%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ LDG + + ++ V+ ATNR + +DPAL R GR DR+I+ P A R EILRIH+++
Sbjct: 273 LLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRS 332
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCSRQPCSRFVRRWISLTSRTIRL 571
M L +DL+ IA + +G GA+L +C+ R + +T L
Sbjct: 333 MNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDFEL 382
Score = 67.3 bits (157), Expect = 2e-12
Identities = 31/71 (43%), Positives = 47/71 (66%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARAVA+ T F ++G E++ K GE +R+ F A +++P+IIF+DE+D
Sbjct: 189 GTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 248
Query: 183 AIAPKREKTHG 215
+I R + G
Sbjct: 249 SIGSSRSDSSG 259
Score = 42.3 bits (95), Expect = 7e-05
Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Frame = +1
Query: 544 LIDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETV----VE-VPNVTWTDIGGLE 708
++D+ D E+ ++ V++ N Y + K P+ + V VE +P+ T+ +GGLE
Sbjct: 92 VVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLE 151
Query: 709 GVKRELQELVQYPVEHPD 762
+E++E+++ PV+HP+
Sbjct: 152 KQIKEIKEVIELPVKHPE 169
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 80.6 bits (190), Expect = 2e-16
Identities = 36/88 (40%), Positives = 59/88 (67%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ LDG V V+AATNR +++DPAL R GR DR+++ +P+ R+ ILRIH++
Sbjct: 312 LLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRK 371
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLC 505
M + DD++ E++A + + GA L S+C
Sbjct: 372 MAIDDDINWEELARSTDEYNGAMLKSVC 399
Score = 69.3 bits (162), Expect = 6e-13
Identities = 36/84 (42%), Positives = 50/84 (59%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARA A ++ A F + P+++ G+ +R AF A + SPAIIFIDELD
Sbjct: 229 GTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELD 288
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
AI KR + +R + +L L
Sbjct: 289 AIGTKRFDSEKAGDREVQRTMLEL 312
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 79.4 bits (187), Expect = 5e-16
Identities = 38/84 (45%), Positives = 54/84 (64%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+AVAN+T A F + G E++ K G+ +R+ F A+++SP+I+FIDE+D
Sbjct: 235 GTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEID 294
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
AI KR ER I +L L
Sbjct: 295 AIGTKRYDAQSGAEREIQRTMLEL 318
Score = 64.5 bits (150), Expect = 2e-11
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +2
Query: 242 VIDALDGMKKSSHVI-VMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 418
+++ LDG S I V+ ATNR + +DPAL R GR DR+I PD + +I IHT
Sbjct: 318 LLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTS 377
Query: 419 NMKLGDDVDLEQIAAESHGHVGADLASLCS 508
M LG+DV+LE++ GA++ ++ S
Sbjct: 378 KMNLGEDVNLEELIQCKDDLSGAEIKAIVS 407
Score = 35.1 bits (77), Expect = 0.011
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 667 EVPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
+ P ++ DIGGLE +E++E V+ P+ HP+
Sbjct: 184 KAPTESYADIGGLESQIQEIKEAVELPLTHPE 215
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 77.8 bits (183), Expect = 2e-15
Identities = 37/82 (45%), Positives = 55/82 (67%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGK+ +A+AVA E G+ FF I+ +++SK GESE +R+ FE A + P+IIFIDE+D
Sbjct: 172 GTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEID 231
Query: 183 AIAPKREKTHGEVERRIVSQLL 248
++ R + E RRI ++ L
Sbjct: 232 SLCGSRSEGESESSRRIKTEFL 253
Score = 45.6 bits (103), Expect = 8e-06
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Frame = +2
Query: 188 CTKERENPR*SGKTYRFTVIDALDGM-KKSSHVIVMAATNRPNSIDPALRRFGRFDREID 364
C E S + + + ++G+ K S V+V+ ATN P ++D A+RR RF++ I
Sbjct: 234 CGSRSEGESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR--RFEKRIY 291
Query: 365 IGIPDATGRLEILRIHTKNMKLG-DDVDLEQIAAESHGHVGADLASLCSRQPCSRFVRR 538
I +P+A R + ++ + D +++A + G+ G+D+ S+ R VRR
Sbjct: 292 IPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDI-SIVVRDAIMEPVRR 349
Score = 41.1 bits (92), Expect = 2e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 526 IREKMDLIDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETV-VEVPNVTWTDIGG 702
++EK + I + + V S + + + + K SAL + VE PNV W DI G
Sbjct: 74 LQEKNNQISSKSRVSNGNVEGSNSPTANEALDSDAKKLRSALTSAILVEKPNVRWDDIAG 133
Query: 703 LEGVKRELQELVQYPVEHP 759
LE K L+E V P++ P
Sbjct: 134 LENAKEALKETVLLPIKLP 152
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 75.8 bits (178), Expect = 7e-15
Identities = 40/87 (45%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++ARAVA E+ + FF I+ + SK GESE +R F A K SP+IIF+DE+D
Sbjct: 502 GTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEID 561
Query: 183 AIAPKREKTHGEVE--RRIVSQLLTLW 257
++ R E E RRI ++ L W
Sbjct: 562 SLLSARSSDGNEHETSRRIKTEFLIQW 588
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/40 (52%), Positives = 22/40 (55%)
Frame = +1
Query: 643 SALRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
S LRE VV V W DI GLE K L+E V YP PD
Sbjct: 444 SILREIVVSGDEVHWDDISGLEFAKHSLKEAVVYPFLRPD 483
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 75.4 bits (177), Expect = 9e-15
Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++ +AVAN T A F + G E + K GE +R F A +N+PAIIFIDE+D
Sbjct: 178 GTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEID 237
Query: 183 AIAPKR--EKTHGEVE-RRIVSQLLT 251
AIA KR +T + E +RI+ +LLT
Sbjct: 238 AIATKRFDAQTGADREVQRILIELLT 263
Score = 52.8 bits (121), Expect = 5e-08
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDI-GIPDATGRLEILRIHTK 418
++ +DG + ++V V+ ATNR +++DPAL R GR DR+I+ D R + + T
Sbjct: 261 LLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITA 320
Query: 419 NMKLGDDVDLEQIAAESHGHVGADLASL 502
M L +VDL+ GA +A++
Sbjct: 321 KMLLSPEVDLDTFIMRPDASSGAQIAAI 348
Score = 33.9 bits (74), Expect = 0.026
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +1
Query: 634 SSPSALRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
SS S LR E P+V++ D+GGL+ K+E++E V+ P+ D
Sbjct: 118 SSISMLRPD--ERPDVSYADVGGLDVQKQEVREAVELPLTQGD 158
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 74.9 bits (176), Expect = 1e-14
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
Frame = +2
Query: 239 TVIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 418
T++ +DG+ V+V+ ATNRPN +DPALRR GRFDRE +P+ R++IL I++
Sbjct: 500 TLLALMDGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQARMKILEINSL 559
Query: 419 NM--KLGDDVDLEQIAAESHGHVGADLASLCS 508
+ K+ + L +A + G+ GADL +LC+
Sbjct: 560 HFSPKIPESY-LLHLAESTSGYGGADLKALCT 590
Score = 70.5 bits (165), Expect = 2e-13
Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIF 167
GTGKTL+AR +A FFL G + +SK GE+E LR FEEA + P+IIF
Sbjct: 416 GTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPSIIF 475
Query: 168 IDELDAIAPKREKTHGEVERRIVSQLLTL 254
DE+D +AP R + IVS LL L
Sbjct: 476 FDEIDGLAPIRSSKQEQTHSSIVSTLLAL 504
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 78 EIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
E++ S L K F EA KN+P+IIFI+ ++
Sbjct: 742 ELLMDTTTSPRSLLTKIFSEARKNAPSIIFINNVE 776
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 73.7 bits (173), Expect = 3e-14
Identities = 33/87 (37%), Positives = 56/87 (64%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ +DG ++ ATNRP+++DPAL R GR DR+I+I +P+ GR+EIL+IH +
Sbjct: 259 LLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEK 318
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASL 502
+ ++D E + + G GADL ++
Sbjct: 319 VSKQGEIDYEALVKLTDGTNGADLRNV 345
Score = 64.1 bits (149), Expect = 2e-11
Identities = 34/84 (40%), Positives = 47/84 (55%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARAVA G F + I+ K GES +R+ F A ++ P +IF+DE+D
Sbjct: 176 GTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEID 235
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
AI +R +R I L+ L
Sbjct: 236 AIGGRRFSEGTSADREIQRTLMEL 259
Score = 29.5 bits (63), Expect = 0.56
Identities = 10/41 (24%), Positives = 26/41 (63%)
Frame = +1
Query: 640 PSALRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
P ++ + ++++ +GGL REL+E+++ P+++P+
Sbjct: 116 PLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPE 156
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 72.1 bits (169), Expect = 8e-14
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++ARAVA E A FF I+ + SK G+SE +R FE A + + ++IF+DE+D
Sbjct: 422 GTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEID 481
Query: 183 AIAPKREKTHGEVE--RRIVSQLLTLW 257
+I R + E E RR+ ++ L W
Sbjct: 482 SILSARNDSGNEHESSRRLKTEFLIQW 508
Score = 39.9 bits (89), Expect = 4e-04
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +2
Query: 272 SSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILR--IHTKNMKLGDDVD 445
S V+V+AATN P ID A RR RF + I +P+ R + L +H + L ++ D
Sbjct: 523 SPRVLVLAATNLPWCIDEAARR--RFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEE-D 579
Query: 446 LEQIAAESHGHVGADLASL 502
LE++ + G+ G+D+ +L
Sbjct: 580 LEELVNLTEGYSGSDITAL 598
Score = 32.3 bits (70), Expect = 0.080
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 649 LRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
+ E + V W+DI GL+ K L+E V YP P+
Sbjct: 366 MNEIISNHEPVYWSDIAGLDDAKNSLKEAVIYPFLRPE 403
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 71.7 bits (168), Expect = 1e-13
Identities = 37/98 (37%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMK-- 427
+DG+ + ++++V+ TNR + ID AL R GR + ++I +PD GRL+IL+IHT M
Sbjct: 409 MDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASN 468
Query: 428 --LGDDVDLEQIAAESHGHVGADLASLCSRQPCSRFVR 535
L +DVD+E++A+ + GA++A L F R
Sbjct: 469 GILENDVDMEELASLTKNFSGAEIAGLIKSASSFAFYR 506
Score = 62.9 bits (146), Expect = 5e-11
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 11/93 (11%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFF-FLINGPEIMSKLAGESESNLRKAFEEADK--------NSP 155
GTGKTLIAR + A ++NGPEI++K G+SE N+RK F +A++ +
Sbjct: 314 GTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAEREYRDRGEESGL 373
Query: 156 AIIFIDELDAIAPKREKTHGE--VERRIVSQLL 248
II DELDAI KR + G+ V ++V+QLL
Sbjct: 374 HIIIFDELDAICKKRGSSGGDTGVGDQVVNQLL 406
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 TGKTLIARAVA-NETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
+GKT +A +A F L++ ++ +++ + FE++ K+ ++I +DE++
Sbjct: 596 SGKTALAATIALGSEFPFVKLVSAESMVGMNENARVAHVNRVFEDSYKSPLSVIVVDEIE 655
Query: 183 AI 188
I
Sbjct: 656 RI 657
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKT +A A+++ F I GPE++ K G+SE +R F A P ++F DE D
Sbjct: 650 GCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFD 709
Query: 183 AIAPKREKTHGEVERRIVSQLLT 251
++AP+R + V R+V+Q+LT
Sbjct: 710 SVAPRRGQDSTGVTDRVVNQILT 732
Score = 58.4 bits (135), Expect = 1e-09
Identities = 30/87 (34%), Positives = 51/87 (58%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DG + V ++AAT RP+ IDPAL R GR D+ I +P+ RLE+L+
Sbjct: 730 ILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANR 789
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASL 502
+ + L++++ + G+ ADL+SL
Sbjct: 790 FHIENAAMLKKLSTLTDGYTYADLSSL 816
Score = 29.9 bits (64), Expect = 0.43
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +1
Query: 640 PSALRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEH 756
P LR+ ++ W DI G++ K ++++++ PV++
Sbjct: 590 PLQLRKAKFVKSSIRWIDIAGMQEAKEAVRDIIESPVKY 628
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 58.8 bits (136), Expect = 8e-10
Identities = 29/85 (34%), Positives = 49/85 (57%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKT++A+A+A ++ A F ++ + K GES + F A K P IIFIDE+D
Sbjct: 135 GCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTIIFIDEID 194
Query: 183 AIAPKREKTHGEVERRIVSQLLTLW 257
+R++T E +I ++ +++W
Sbjct: 195 TFLRQRQRTDHEAMAQIKAEFMSMW 219
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 DGMKKS-SHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG 433
DG+ S V+V+ ATNRP ID A+RR R + I +P+A R +IL ++ K + L
Sbjct: 220 DGLLSGQSRVLVLGATNRPADIDEAIRR--RMPKVFSIPLPNAEQRRKILELYLKKVPLE 277
Query: 434 DDVDLEQIAAESHGHVGADLASLC 505
+ D + + G G+ + +C
Sbjct: 278 ANFDWNGVVNATAGLSGSYIKEVC 301
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 39.9 bits (89), Expect = 4e-04
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIG--IPDATGRLEILRIHT 415
+++ALDG+ S I+ TN P +DPAL R GR D + +G P+ R R +
Sbjct: 327 LLNALDGVTSSDERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQV-REMFTRFYG 385
Query: 416 KNMKLGDDV 442
+ ++ DD+
Sbjct: 386 HSPEMADDL 394
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 526 IREKMDLIDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIGGL 705
I++ DL DD++ ++S ++ A T + S +E + E+P++ ++D
Sbjct: 76 IKQNRVRFDLPDDELSRSNVSSPEKTL--LTSASTSTFDSLKKELLPELPSLAYSDDDEF 133
Query: 706 EGVKRELQELVQYP 747
EL V YP
Sbjct: 134 PSSPEELNSHVNYP 147
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 497 SLCSRQPCSRFVRRWISLTSRTIRLTQRFSILWLS 601
S S P S F+ +WI + + +RL +F I WLS
Sbjct: 50 SSISDVPKSGFLVKWIIIDAIYLRLLPKFRIPWLS 84
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -2
Query: 643 TETISSLRTGSYPWRQPEN*EPLRQSDRPRGQ*DPSSHESAARLPRAQRREISAHVT 473
TET LR S P +QP + LRQ P Q S + + P ++ I + V+
Sbjct: 766 TET-KHLRKESIPSKQPSGGQQLRQESLPSQQSSESKQSTQHQQPVEVQKSIQSDVS 821
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 176 TRCYCTKERENPR*SGKTYRFTVIDALDGMKKSS---HVIVMAATNRP 310
T + K R+N S K T+I A D +K ++ VIVM T++P
Sbjct: 888 TNPFIEKGRKNQVKSVKIKGMTIIKAPDALKNANLHNEVIVMQTTDKP 935
>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 114
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 508 EAALQQIREKMDLIDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTW 687
++ LQQI +K ++DLE D + +++ SMDN R + TV V +
Sbjct: 19 KSRLQQIAQK--IVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTVVPILK 76
Query: 688 TDIGGLE 708
T G++
Sbjct: 77 TTQEGIQ 83
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 9.2
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = -1
Query: 218 FTVGFLSLWCNSIEFINEDNSRR 150
+TV ++LW +++++ +D RR
Sbjct: 633 YTVKIIALWGRAVKYLKQDGKRR 655
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,329
Number of Sequences: 5004
Number of extensions: 54664
Number of successful extensions: 292
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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