Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0711.Seq
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.79 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.79 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 104 FSRQLRHDLRSIN*KEESSCFISNSTSNEC 15
           F R +R DL S   +EE SC I     N C
Sbjct: 134 FKRTVRKDL-SYACREEKSCIIDKRQRNRC 162


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 104 FSRQLRHDLRSIN*KEESSCFISNSTSNEC 15
           F R +R DL S   +EE SC I     N C
Sbjct: 134 FKRTVRKDL-SYACREEKSCIIDKRQRNRC 162


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 556 EDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIG 699
           +DD ID + +NSL +S   +   +T      ++E+ VEV  ++W   G
Sbjct: 223 DDDSIDFDRMNSLGLS---WLDQLTNLGFLGMKES-VEVDQLSWLGSG 266


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 556 EDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIG 699
           +DD ID + +NSL +S   +   +T      ++E+ VEV  ++W   G
Sbjct: 261 DDDSIDFDRMNSLGLS---WLDQLTNLGFLGMKES-VEVDQLSWLGSG 304


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 68  N*KEESSCFISNSTSNEC 15
           N  E ++C ISNS +N C
Sbjct: 165 NSPENNTCSISNSYTNGC 182


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 697 RCRSTSRWELPPLSHVTPTETISSLRTGSYPW 602
           R ++T +    P +H    ++    R+GS+ W
Sbjct: 676 RIKTTEKLSTDPNTHFQVNQSHGIKRSGSHSW 707


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 13  KHSLLVLLLMKQELSSF*LMDRRSCLSWRENRSQTSV 123
           KHS +V +LM ++ +S  L+    C +  +NR   ++
Sbjct: 115 KHSNIVKVLMIEQGASLSLITMELCGTTLQNRLDEAI 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,635
Number of Sequences: 438
Number of extensions: 3880
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)