Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0711.Seq
(776 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 160 8e-40
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 157 6e-39
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 157 6e-39
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 99 3e-21
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 96 3e-20
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 92 3e-19
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 92 3e-19
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 91 8e-19
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 90 1e-18
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 89 2e-18
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 89 2e-18
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 89 3e-18
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 85 5e-17
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 83 2e-16
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 82 3e-16
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 82 5e-16
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 81 6e-16
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 81 8e-16
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 81 1e-15
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 80 1e-15
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 80 2e-15
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 79 2e-15
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 79 3e-15
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 78 7e-15
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 77 1e-14
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 77 1e-14
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 76 3e-14
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 75 4e-14
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 75 4e-14
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 75 4e-14
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 75 5e-14
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 75 5e-14
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 75 7e-14
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 74 9e-14
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 73 2e-13
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 73 2e-13
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 73 3e-13
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 73 3e-13
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 73 3e-13
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 72 5e-13
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 71 9e-13
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 69 5e-12
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 69 5e-12
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 69 5e-12
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 69 5e-12
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 69 5e-12
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 69 5e-12
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 68 6e-12
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 68 6e-12
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 68 8e-12
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 68 8e-12
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 67 1e-11
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 66 2e-11
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 65 6e-11
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 63 2e-10
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 63 2e-10
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 51 7e-07
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 51 7e-07
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 48 5e-06
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 48 5e-06
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 46 3e-05
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 37 0.017
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 37 0.017
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 35 0.052
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 33 0.21
At3g20410.1 68416.m02585 calmodulin-domain protein kinase isofor... 32 0.37
At1g25230.1 68414.m03131 purple acid phosphatase family protein ... 31 0.85
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 31 1.1
At3g49210.1 68416.m05378 expressed protein 31 1.1
At2g41860.2 68415.m05174 calcium-dependent protein kinase, putat... 31 1.1
At2g41860.1 68415.m05173 calcium-dependent protein kinase, putat... 31 1.1
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c... 30 1.5
At5g66770.1 68418.m08416 scarecrow transcription factor family p... 30 2.0
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 30 2.0
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 30 2.0
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 29 2.6
At5g44320.1 68418.m05427 eukaryotic translation initiation facto... 29 3.4
At2g34440.1 68415.m04225 MADS-box family protein similar to SP|Q... 29 4.5
At1g61950.1 68414.m06988 calcium-dependent protein kinase, putat... 29 4.5
At1g50700.1 68414.m05701 calcium-dependent protein kinase, putat... 29 4.5
At5g08260.1 68418.m00971 serine carboxypeptidase S10 family prot... 28 6.0
At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/oxyge... 28 6.0
At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/oxyge... 28 6.0
At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/oxyge... 28 6.0
At1g05990.1 68414.m00627 calcium-binding protein, putative stron... 28 6.0
At4g15180.1 68417.m02328 SET domain-containing protein contains ... 28 7.9
At1g21550.1 68414.m02695 calcium-binding protein, putative conta... 28 7.9
At1g13280.1 68414.m01542 allene oxide cyclase family protein sim... 28 7.9
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 160 bits (389), Expect = 8e-40
Identities = 77/84 (91%), Positives = 83/84 (98%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFIDE+D
Sbjct: 252 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 311
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
+IAPKREKTHGEVERRIVSQLLTL
Sbjct: 312 SIAPKREKTHGEVERRIVSQLLTL 335
Score = 148 bits (359), Expect = 4e-36
Identities = 64/89 (71%), Positives = 80/89 (89%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DG+K +HVIVM ATNRPNSIDPALRRFGRFDREIDIG+PD GRLE+LRIHTKN
Sbjct: 332 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKN 391
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCS 508
MKL +DVDLE+++ ++HG+VGADLA+LC+
Sbjct: 392 MKLAEDVDLERVSKDTHGYVGADLAALCT 420
Score = 139 bits (336), Expect = 2e-33
Identities = 65/85 (76%), Positives = 77/85 (90%)
Frame = +1
Query: 508 EAALQQIREKMDLIDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTW 687
EAALQ IREKMD+IDL+D++IDAE+LNS+AVS D+F+ A+ S+PSALRETVVEVPNV+W
Sbjct: 421 EAALQCIREKMDVIDLDDEEIDAEILNSMAVSNDHFQTALGNSNPSALRETVVEVPNVSW 480
Query: 688 TDIGGLEGVKRELQELVQYPVEHPD 762
DIGGLE VKRELQE VQYPVEHP+
Sbjct: 481 EDIGGLENVKRELQETVQYPVEHPE 505
Score = 81.8 bits (193), Expect = 5e-16
Identities = 39/86 (45%), Positives = 62/86 (72%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKTL+A+A+ANE A F I GPE+++ GESE+N+R+ F++A +++P ++F DELD
Sbjct: 525 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELD 584
Query: 183 AIAPKREKTHGE---VERRIVSQLLT 251
+IA +R + G+ R+++QLLT
Sbjct: 585 SIATQRGNSVGDAGGAADRVLNQLLT 610
Score = 74.1 bits (174), Expect = 9e-14
Identities = 37/98 (37%), Positives = 54/98 (55%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DGM V ++ ATNRP+ IDPAL R GR D+ I I +PD R +I + +
Sbjct: 608 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRK 667
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCSRQPCSRFVR 535
+ DVDL +A + G GAD+ +C R C +R
Sbjct: 668 SPVAKDVDLRALAKYTQGFSGADITEICQRS-CKYAIR 704
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 652 RETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHP 759
RE + V + D+GG+ +++ELV+ P+ HP
Sbjct: 196 REDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHP 231
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 157 bits (382), Expect = 6e-39
Identities = 76/84 (90%), Positives = 83/84 (98%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFIDE+D
Sbjct: 251 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 310
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
+IAPKREKT+GEVERRIVSQLLTL
Sbjct: 311 SIAPKREKTNGEVERRIVSQLLTL 334
Score = 149 bits (360), Expect = 3e-36
Identities = 65/89 (73%), Positives = 80/89 (89%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DG+K +HVIVM ATNRPNSIDPALRRFGRFDREIDIG+PD GRLE+LRIHTKN
Sbjct: 331 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKN 390
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCS 508
MKL +DVDLE+I+ ++HG+VGADLA+LC+
Sbjct: 391 MKLAEDVDLERISKDTHGYVGADLAALCT 419
Score = 139 bits (336), Expect = 2e-33
Identities = 66/85 (77%), Positives = 75/85 (88%)
Frame = +1
Query: 508 EAALQQIREKMDLIDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTW 687
EAALQ IREKMD+IDLEDD IDAE+LNS+AVS ++F A+ S+PSALRETVVEVPNV+W
Sbjct: 420 EAALQCIREKMDVIDLEDDSIDAEILNSMAVSNEHFHTALGNSNPSALRETVVEVPNVSW 479
Query: 688 TDIGGLEGVKRELQELVQYPVEHPD 762
DIGGLE VKRELQE VQYPVEHP+
Sbjct: 480 EDIGGLENVKRELQETVQYPVEHPE 504
Score = 81.8 bits (193), Expect = 5e-16
Identities = 38/86 (44%), Positives = 62/86 (72%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKTL+A+A+ANE A F + GPE+++ GESE+N+R+ F++A +++P ++F DELD
Sbjct: 524 GCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELD 583
Query: 183 AIAPKREKTHGE---VERRIVSQLLT 251
+IA +R + G+ R+++QLLT
Sbjct: 584 SIATQRGNSAGDAGGAADRVLNQLLT 609
Score = 70.5 bits (165), Expect = 1e-12
Identities = 36/98 (36%), Positives = 53/98 (54%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DGM V ++ ATNRP+ ID AL R GR D+ I I +PD RL I + +
Sbjct: 607 LLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRK 666
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCSRQPCSRFVR 535
+ DVD+ +A + G GAD+ +C R C +R
Sbjct: 667 SPVAKDVDVTALAKYTQGFSGADITEICQR-ACKYAIR 703
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 652 RETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHP 759
RE + V + D+GG+ +++ELV+ P+ HP
Sbjct: 195 REDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHP 230
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 157 bits (382), Expect = 6e-39
Identities = 76/84 (90%), Positives = 83/84 (98%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFIDE+D
Sbjct: 251 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 310
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
+IAPKREKT+GEVERRIVSQLLTL
Sbjct: 311 SIAPKREKTNGEVERRIVSQLLTL 334
Score = 149 bits (360), Expect = 3e-36
Identities = 65/89 (73%), Positives = 80/89 (89%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DG+K +HVIVM ATNRPNSIDPALRRFGRFDREIDIG+PD GRLE+LRIHTKN
Sbjct: 331 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKN 390
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCS 508
MKL +DVDLE+I+ ++HG+VGADLA+LC+
Sbjct: 391 MKLAEDVDLERISKDTHGYVGADLAALCT 419
Score = 138 bits (334), Expect = 4e-33
Identities = 65/85 (76%), Positives = 75/85 (88%)
Frame = +1
Query: 508 EAALQQIREKMDLIDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTW 687
EAALQ IREKMD+IDLEDD IDAE+LNS+AV+ ++F A+ S+PSALRETVVEVPNV+W
Sbjct: 420 EAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSNPSALRETVVEVPNVSW 479
Query: 688 TDIGGLEGVKRELQELVQYPVEHPD 762
DIGGLE VKRELQE VQYPVEHP+
Sbjct: 480 NDIGGLENVKRELQETVQYPVEHPE 504
Score = 77.8 bits (183), Expect = 7e-15
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 4/87 (4%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKTL+A+A+ANE A F + GPE+++ GESE+N+R+ F++A +++P ++F DELD
Sbjct: 524 GCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELD 583
Query: 183 AIAPKR----EKTHGEVERRIVSQLLT 251
+IA +R G R+++QLLT
Sbjct: 584 SIATQRGGGSGGDGGGAADRVLNQLLT 610
Score = 71.3 bits (167), Expect = 7e-13
Identities = 36/98 (36%), Positives = 53/98 (54%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DGM V ++ ATNRP+ ID AL R GR D+ I I +PD RL I + +
Sbjct: 608 LLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRK 667
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCSRQPCSRFVR 535
+ DVD+ +A + G GAD+ +C R C +R
Sbjct: 668 SPIAKDVDIGALAKYTQGFSGADITEICQR-ACKYAIR 704
Score = 31.1 bits (67), Expect = 0.85
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 652 RETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHP 759
RE + +V + D+GG+ +++ELV+ P+ HP
Sbjct: 195 REDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHP 230
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 99.1 bits (236), Expect = 3e-21
Identities = 45/90 (50%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Frame = +2
Query: 239 TVIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 418
T+++ +DG+ ++ V+V+AATNRP+SI+PALRR GR DREI+IG+P +T R +IL I +
Sbjct: 507 TLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPSSTQRSDILHIILR 566
Query: 419 NMKLG-DDVDLEQIAAESHGHVGADLASLC 505
M+ ++ +EQ+A +HG VGADL++LC
Sbjct: 567 GMRHSLSNIQVEQLAMATHGFVGADLSALC 596
Score = 89.0 bits (211), Expect = 3e-18
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT +AR A +G FF +NGPEI+S+ GESE L + F A +PA++FID+LD
Sbjct: 428 GTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNATPAVVFIDDLD 487
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
AIAP R++ E+ +R+V+ LL L
Sbjct: 488 AIAPARKEGGEELSQRMVATLLNL 511
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/84 (44%), Positives = 57/84 (67%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG 433
LDG+ + V V+AATNRP+ ID AL R GRFDR + +G P+ T R IL+IH + +
Sbjct: 854 LDGLHQRVGVTVIAATNRPDKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLRKIPCS 913
Query: 434 DDVDLEQIAAESHGHVGADLASLC 505
D+ L+++A+ + G+ GAD++ +C
Sbjct: 914 SDICLKELASITKGYTGADISLIC 937
Score = 76.2 bits (179), Expect = 2e-14
Identities = 40/84 (47%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G KTL+ARAVA+E F + GPE+ SK GESE +R F +A N+P+IIF DE+D
Sbjct: 768 GCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEID 827
Query: 183 AIAPKREKTHG--EVERRIVSQLL 248
++A R K + V R++SQLL
Sbjct: 828 SLASIRGKENDGVSVSDRVMSQLL 851
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/59 (45%), Positives = 40/59 (67%)
Frame = +1
Query: 586 NSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
++L+V ++F A TK PSA+RE ++EVP V W D+GG VK +L E V++P +H D
Sbjct: 690 HTLSVGFEDFENAKTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQD 748
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 95.9 bits (228), Expect = 3e-20
Identities = 45/95 (47%), Positives = 65/95 (68%)
Frame = +2
Query: 221 GKTYRFTVIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEI 400
G+ T++ +DG++++ ++V+AATNRP +ID AL R GRFD + + PD R EI
Sbjct: 407 GERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEI 466
Query: 401 LRIHTKNMKLGDDVDLEQIAAESHGHVGADLASLC 505
L++HT+NM LGDDVDL +IA E+ GA+L LC
Sbjct: 467 LQVHTRNMTLGDDVDLRKIAEETDLFTGAELEGLC 501
Score = 90.6 bits (215), Expect = 1e-18
Identities = 47/116 (40%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Frame = +2
Query: 236 FTVIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHT 415
FT++D+ + V+V+A+TNR ++IDPALRR GRFD +++ P+ RL+IL+++T
Sbjct: 150 FTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYT 209
Query: 416 KNMKLGDDVDLEQIAAESHGHVGADLASLCSRQPCSRFVRRWIS--LTSRTIRLTQ 577
K + L VDL+ IA +G+VGADL +LC S R S LTS+ ++ +
Sbjct: 210 KKVNLDPSVDLQAIAISCNGYVGADLEALCREATISASKRSSDSLILTSQDFKIAK 265
Score = 67.7 bits (158), Expect = 8e-12
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNS----PAIIFI 170
GTGKT + RAV E A +++ + AGESE LR+AF EA ++ P++IFI
Sbjct: 66 GTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFI 125
Query: 171 DELDAIAPKREKTHGEVERRIVSQLLTL 254
DE+D + P+R+ E + RI SQL TL
Sbjct: 126 DEIDVLCPRRD-ARREQDVRIASQLFTL 152
Score = 62.5 bits (145), Expect = 3e-10
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G KT +A+A AN A FF ++ E+ S GE E+ LR F+ A SP+IIF DE D
Sbjct: 330 GCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEAD 389
Query: 183 AIAPKR----EKTHGEVERRIVSQLLT 251
+A KR V R++S LLT
Sbjct: 390 VVACKRGDESSSNSSTVGERLLSTLLT 416
Score = 58.4 bits (135), Expect = 5e-09
Identities = 23/57 (40%), Positives = 40/57 (70%)
Frame = +1
Query: 586 NSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEH 756
+SL ++ +F+ A + PS R VE+P VTW D+GGL+ +K++LQ+ V++P++H
Sbjct: 252 DSLILTSQDFKIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKH 308
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 92.3 bits (219), Expect = 3e-19
Identities = 43/87 (49%), Positives = 61/87 (70%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DG ++ VIV+AATNRP +D AL R GRFDR++ +G+PD GR EIL++H+++
Sbjct: 349 ILTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRS 408
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASL 502
KL DV L IA + G GADLA+L
Sbjct: 409 KKLDKDVSLSVIAMRTPGFSGADLANL 435
Score = 68.9 bits (161), Expect = 3e-12
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+A+A E G FF ++G E + G S R F +A NSP I+FIDE+D
Sbjct: 266 GTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEID 325
Query: 183 AIAPKREKTHG---EVERRIVSQLLT 251
A+ R G + + ++Q+LT
Sbjct: 326 AVGRMRGTGIGGGNDEREQTLNQILT 351
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 92.3 bits (219), Expect = 3e-19
Identities = 42/83 (50%), Positives = 61/83 (73%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKT +A A+ANE G F+ I+ E++S ++G SE N+R+ F +A + +P+I+FIDE+D
Sbjct: 277 GCGKTKLANAIANEAGVPFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEID 336
Query: 183 AIAPKREKTHGEVERRIVSQLLT 251
AI KRE E+E+RIV+QLLT
Sbjct: 337 AIGSKRENQQREMEKRIVTQLLT 359
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/82 (46%), Positives = 51/82 (62%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKTLIA+A ANE GA F I G E+++K GESE +R F+ A +P +IF DE+D
Sbjct: 572 GCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRARTCAPCVIFFDEVD 631
Query: 183 AIAPKREKTHGEVERRIVSQLL 248
A+ R K V R+++Q L
Sbjct: 632 ALTTSRGKEGAWVVERLLNQFL 653
Score = 71.7 bits (168), Expect = 5e-13
Identities = 35/74 (47%), Positives = 50/74 (67%)
Frame = +2
Query: 281 VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLEQIA 460
V+V+ ATNRP+++DPALRR GRF+ EI + PD R EIL + + ++L D ++IA
Sbjct: 380 VLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIA 439
Query: 461 AESHGHVGADLASL 502
+ G VGADL S+
Sbjct: 440 RLTPGFVGADLESV 453
Score = 58.0 bits (134), Expect = 6e-09
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG 433
LDG ++ + V V+ ATNRP+ +DPA R GRF + + +P+A R IL+ + +
Sbjct: 656 LDGGERRN-VYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPID 714
Query: 434 DDVDLEQIAAES-HGHVGADLASLCSR 511
VDL+ IA + G GADLA L +
Sbjct: 715 PSVDLDGIAKNNCEGFSGADLAHLVQK 741
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +1
Query: 577 EVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEH 756
E L L V M +F A+ S RE VP+V W D+GGL+ ++ + + P++
Sbjct: 491 EELEKLFVKMSDFEEAVNLVQASLTREGFSIVPDVKWDDVGGLDHLRLQFNRYIVRPIKK 550
Query: 757 PD 762
PD
Sbjct: 551 PD 552
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 91.1 bits (216), Expect = 8e-19
Identities = 40/87 (45%), Positives = 61/87 (70%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DG +S VIV+AATNRP+ +D AL R GRFDR++ + PD GR++IL++H++
Sbjct: 376 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSRG 435
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASL 502
+G DVD E++A + G GADL +L
Sbjct: 436 KAIGKDVDYEKVARRTPGFTGADLQNL 462
Score = 67.7 bits (158), Expect = 8e-12
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARAVA E G FF E + G S +R FE+A +P I+FIDE+D
Sbjct: 293 GTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEID 352
Query: 183 AIAPKREKTHG---EVERRIVSQLLT 251
A+ +R G + + ++QLLT
Sbjct: 353 AVGRQRGAGMGGGNDEREQTINQLLT 378
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 90.2 bits (214), Expect = 1e-18
Identities = 40/87 (45%), Positives = 61/87 (70%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DG +S VIV+AATNRP+ +D AL R GRFDR++ + PD GR++IL++H++
Sbjct: 388 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG 447
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASL 502
LG DVD +++A + G GADL +L
Sbjct: 448 KALGKDVDFDKVARRTPGFTGADLQNL 474
Score = 67.7 bits (158), Expect = 8e-12
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARAVA E G FF E + G S +R FE+A +P I+FIDE+D
Sbjct: 305 GTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEID 364
Query: 183 AIAPKREKTHG---EVERRIVSQLLT 251
A+ +R G + + ++QLLT
Sbjct: 365 AVGRQRGAGMGGGNDEREQTINQLLT 390
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 89.4 bits (212), Expect = 2e-18
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHT-- 415
++ +DG SS VIV+ ATNR + +DPALRR GRFDR + + PD GR IL++H
Sbjct: 456 LLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSK 515
Query: 416 KNMKLGDDVDLEQIAAESHGHVGADLASL 502
K + LGDDV+L IA+ + G GADLA+L
Sbjct: 516 KELPLGDDVNLASIASMTTGFTGADLANL 544
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+AVA E+ F + E + G S +R F A K +P+IIFIDE+D
Sbjct: 372 GTGKTLLAKAVAGESDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEID 431
Query: 183 AIAPKRE----KTHGEVERRIVSQLLT 251
A+A R+ + + ++QLLT
Sbjct: 432 AVAKSRDGKFRMVSNDEREQTLNQLLT 458
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 89.4 bits (212), Expect = 2e-18
Identities = 45/108 (41%), Positives = 68/108 (62%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DG + ++ VIV+AATNR + +D AL R GRFDR++ + +PD GR +IL++H N
Sbjct: 353 LLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGN 412
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCSRQPCSRFVRRWISLTSRTI 565
K +DV LE IA + G GADLA+L + R S++S+ I
Sbjct: 413 KKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEI 460
Score = 71.7 bits (168), Expect = 5e-13
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+A+A E G FF I+G E + G S +R F++A +N+P I+F+DE+D
Sbjct: 270 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 329
Query: 183 AIAPKREKTHG---EVERRIVSQLLT 251
A+ +R G + + ++QLLT
Sbjct: 330 AVGRQRGTGIGGGNDEREQTLNQLLT 355
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 89.0 bits (211), Expect = 3e-18
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHT-- 415
++ +DG +S VIV+ ATNR + +DPALRR GRFDR + + PD GR ILR+H
Sbjct: 452 LLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSK 511
Query: 416 KNMKLGDDVDLEQIAAESHGHVGADLASL 502
K + LGDDV+L IA+ + G GADLA+L
Sbjct: 512 KELPLGDDVNLGSIASMTTGFTGADLANL 540
Score = 61.7 bits (143), Expect = 5e-10
Identities = 30/67 (44%), Positives = 40/67 (59%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+AVA E F + E + G S +R F A K +P+IIFIDE+D
Sbjct: 368 GTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEID 427
Query: 183 AIAPKRE 203
A+A R+
Sbjct: 428 AVAKSRD 434
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 85.0 bits (201), Expect = 5e-17
Identities = 40/87 (45%), Positives = 59/87 (67%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DG + ++ VIV+AATNR + +D AL R GRFDR++ + +PD GR +IL++H+ N
Sbjct: 346 LLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGN 405
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASL 502
K V LE IA + G GADLA+L
Sbjct: 406 KKFESGVSLEVIAMRTPGFSGADLANL 432
Score = 71.7 bits (168), Expect = 5e-13
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+A+A E G FF I+G E + G S +R F++A +N+P I+F+DE+D
Sbjct: 263 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 322
Query: 183 AIAPKREKTHG---EVERRIVSQLLT 251
A+ +R G + + ++QLLT
Sbjct: 323 AVGRQRGTGIGGGNDEREQTLNQLLT 348
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG 433
+DG +++ +IVMAATN P+ +DPAL R GRFDR I + PD GR EIL ++ + +
Sbjct: 488 MDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMS 547
Query: 434 DDVDLEQIAAESHGHVGADLASL 502
+DVD++ IA + G GADLA+L
Sbjct: 548 EDVDVKAIARGTPGFNGADLANL 570
Score = 67.7 bits (158), Expect = 8e-12
Identities = 34/82 (41%), Positives = 47/82 (57%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+A+A E G FF G E G +R F+ A K +P IIFIDE+D
Sbjct: 405 GTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEID 464
Query: 183 AIAPKREKTHGEVERRIVSQLL 248
A+ R++ G ++ + QLL
Sbjct: 465 AVGSTRKQWEGHT-KKTLHQLL 485
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 82.2 bits (194), Expect = 3e-16
Identities = 35/89 (39%), Positives = 56/89 (62%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ LDG ++ V+ ATNRP+++DPAL R GR DR+++ G+PD R +I +IHT+
Sbjct: 295 IVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCS 508
M D+ E +A GAD+ S+C+
Sbjct: 355 MNCERDIRFELLARLCPNSTGADIRSVCT 383
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/66 (46%), Positives = 40/66 (60%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARAVAN T A F + G E++ K GE +R+ F+ A I+F DE+D
Sbjct: 212 GTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVD 271
Query: 183 AIAPKR 200
AI R
Sbjct: 272 AIGGAR 277
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1
Query: 544 LIDLEDDQIDAEVLNSLAVSMDNFRYAMT-----KSSPSALRETVVEVPNVTWTDIGGLE 708
++ L D ++ + V +D +Y + K PS TV E P+VT+ D+GG +
Sbjct: 115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCK 174
Query: 709 GVKRELQELVQYPVEHPD 762
+++E+V+ P+ HP+
Sbjct: 175 EQIEKMREVVELPMLHPE 192
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 81.8 bits (193), Expect = 5e-16
Identities = 38/84 (45%), Positives = 58/84 (69%)
Frame = +2
Query: 251 ALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKL 430
+LDG + VI +A+TNRP+ +DPAL R GRFDR+I I P GR+EIL++H + +
Sbjct: 539 SLDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPM 598
Query: 431 GDDVDLEQIAAESHGHVGADLASL 502
+D+D +A+ + G VGA+LA++
Sbjct: 599 AEDLDYMAVASMTDGMVGAELANI 622
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKTL+A+AVA E G FF I+ + + G S +R ++EA +N+P+++FIDELD
Sbjct: 453 GVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSVVFIDELD 512
Query: 183 AIAPKRE--KTHGEVER-RIVSQLL 248
A+ +R K G ER ++QLL
Sbjct: 513 AVGRERGLIKGSGGQERDATLNQLL 537
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 81.4 bits (192), Expect = 6e-16
Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+AVA E F + GPE+++ GESE N+R FE+A P +IF DELD
Sbjct: 701 GTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFEKARSARPCVIFFDELD 760
Query: 183 AIAPKREKT--HGEVERRIVSQLL 248
++AP R + G V R+VSQ+L
Sbjct: 761 SLAPARGASGDSGGVMDRVVSQML 784
Score = 65.3 bits (152), Expect = 4e-11
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Frame = +2
Query: 254 LDGMKKSSH-VIVMAATNRPNSIDPALRRFGRFDREIDIGI-PDATGRLEILRIHTKNMK 427
+DG+ SS + ++ A+NRP+ IDPAL R GRFD+ + +G+ DA+ R +L+ T+ K
Sbjct: 787 IDGLSDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNADASYRERVLKALTRKFK 846
Query: 428 LGDDVDLEQIAAESHG-HVGADLASLCS 508
L +DV L +A + GAD+ +LC+
Sbjct: 847 LSEDVSLYSVAKKCPSTFTGADMYALCA 874
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +1
Query: 667 EVPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
+VPNV W D+GGLE VK + + VQ P+ H D
Sbjct: 651 KVPNVKWDDVGGLEDVKTSILDTVQLPLLHKD 682
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 81.0 bits (191), Expect = 8e-16
Identities = 39/83 (46%), Positives = 53/83 (63%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARAVA E G FF ++ E + G + +R F A KNSP+IIFIDELD
Sbjct: 377 GTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSPSIIFIDELD 436
Query: 183 AIAPKREKTHGEVERRIVSQLLT 251
A+ KR ++ + + ++QLLT
Sbjct: 437 AVGGKRGRSFNDERDQTLNQLLT 459
Score = 74.9 bits (176), Expect = 5e-14
Identities = 38/89 (42%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DG + + VIV+AATNRP ++D AL R GRF R++ + PD GR +IL IH ++
Sbjct: 457 LLTEMDGFESDTKVIVIAATNRPEALDSALCRPGRFSRKVLVAEPDQEGRRKILAIHLRD 516
Query: 422 MKLGDDVDL--EQIAAESHGHVGADLASL 502
+ L +D L + +A+ + G VGADLA++
Sbjct: 517 VPLEEDAFLICDLVASLTPGFVGADLANI 545
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 80.6 bits (190), Expect = 1e-15
Identities = 41/83 (49%), Positives = 52/83 (62%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG 433
LDG VI + ATNR + +DPAL R GRFDR+I + P+A GRL+IL+IH +K+
Sbjct: 568 LDGFDTGKGVIFLGATNRRDLLDPALLRPGRFDRKIRVRPPNAKGRLDILKIHASKVKMS 627
Query: 434 DDVDLEQIAAESHGHVGADLASL 502
D VDL A+ G GA LA L
Sbjct: 628 DSVDLSSYASNLPGWSGAKLAQL 650
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKTL+A+A+A E G F+ + G E + L G + +R F+ A N P++IFIDE+D
Sbjct: 473 GCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEID 532
Query: 183 AIAPKRE 203
A+A +R+
Sbjct: 533 ALATRRQ 539
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 80.2 bits (189), Expect = 1e-15
Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +2
Query: 239 TVIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 418
T++ +DG+ V+++ ATNR ++ID ALRR GRFDRE + +P R EIL IHT+
Sbjct: 509 TLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFSLPGCEARAEILDIHTR 568
Query: 419 NMKLGDDVDL-EQIAAESHGHVGADLASLCSRQPCSRFVRRW 541
K +L E++AA G+ GADL +LC+ F ++
Sbjct: 569 KWKHPPTRELKEELAATCVGYCGADLKALCTEAAIRAFREKY 610
Score = 79.0 bits (186), Expect = 3e-15
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GTGKTLIARAVA---NETG--AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIF 167
GTGKTLIARA+A ++ G F++ G +++SK GE+E L+ FEEA +N P+IIF
Sbjct: 425 GTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIF 484
Query: 168 IDELDAIAPKREKTHGEVERRIVSQLLTL 254
DE+D +AP R ++ IVS LL L
Sbjct: 485 FDEIDGLAPVRSSKQEQIHNSIVSTLLAL 513
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 79.8 bits (188), Expect = 2e-15
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +2
Query: 239 TVIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 418
T++ LDG+K V+V+ ATN P++IDPALRR GRFDREI +P R I+ +HT+
Sbjct: 847 TLLALLDGLKSRGSVVVIGATNYPDAIDPALRRPGRFDREIYFPLPSVDDRAAIISLHTR 906
Query: 419 NM-KLGDDVDLEQIAAESHGHVGADLASLCSR 511
K L+ IA E+ G GAD+ +LC++
Sbjct: 907 KWPKPVSGYLLKWIAKETAGFAGADIQALCTQ 938
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIF 167
GTGKTL+ RA+ +F G + + K G++E LR F+ A+K P+IIF
Sbjct: 763 GTGKTLVVRALIGSLARGNRRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIF 822
Query: 168 IDELDAIAPKREKTHGEVERRIVSQLLTL 254
DE+D +APKR + + +VS LL L
Sbjct: 823 FDEIDGLAPKRSRQQDQTHSSVVSTLLAL 851
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/84 (46%), Positives = 52/84 (61%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+AVAN T A F + G E++ K G+ +R+ F AD SP+I+FIDE+D
Sbjct: 232 GTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEID 291
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
A+ KR H ER I +L L
Sbjct: 292 AVGTKRYDAHSGGEREIQRTMLEL 315
Score = 77.0 bits (181), Expect = 1e-14
Identities = 37/89 (41%), Positives = 53/89 (59%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ LDG V V+ ATNR S+DPAL R GR DR+I+ +PD R I +IHT
Sbjct: 315 LLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSK 374
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCS 508
M L +DV+LE+ GAD+ ++C+
Sbjct: 375 MTLSEDVNLEEFVMTKDEFSGADIKAICT 403
Score = 34.7 bits (76), Expect = 0.069
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 661 VVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
V + P ++ DIGGLE +E++E V+ P+ HP+
Sbjct: 179 VEKAPLESYADIGGLEAQIQEIKEAVELPLTHPE 212
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 79.0 bits (186), Expect = 3e-15
Identities = 42/83 (50%), Positives = 53/83 (63%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG 433
LDG K++ +IV+AATN P S+D AL R GRFDR I + PD GR +IL H +
Sbjct: 354 LDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKA 413
Query: 434 DDVDLEQIAAESHGHVGADLASL 502
+DVDL IA + G GADLA+L
Sbjct: 414 EDVDLMIIARGTPGFSGADLANL 436
Score = 67.3 bits (157), Expect = 1e-11
Identities = 34/82 (41%), Positives = 45/82 (54%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++ARA+A E G FF +G E G +R F A K SP IIFIDE+D
Sbjct: 270 GTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEID 329
Query: 183 AIAPKREKTHGEVERRIVSQLL 248
AI R + + ++Q+L
Sbjct: 330 AIGGSRNPKDQQYMKMTLNQML 351
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 77.8 bits (183), Expect = 7e-15
Identities = 35/88 (39%), Positives = 53/88 (60%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ LDG ++ V+ ATNRP+ +DPAL R GR DR+++ +PD GR +I +IHT+
Sbjct: 332 ILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRT 391
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLC 505
M D+ E +A GAD+ S+C
Sbjct: 392 MSCERDIRFELLAGLCPNSTGADIRSVC 419
Score = 64.9 bits (151), Expect = 6e-11
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G+GKTL+ARAVAN TGA F + G E++ K GE +R+ F+ A I+F DE+D
Sbjct: 249 GSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEID 308
Query: 183 AIAPKR 200
AI R
Sbjct: 309 AIGGAR 314
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1
Query: 544 LIDLEDDQIDAEVLNSLAVSMDNFRYAMT-----KSSPSALRETVVEVPNVTWTDIGGLE 708
++ L D ++ + V +D +Y + K PS TV E P+ T++DIGG +
Sbjct: 152 VVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCK 211
Query: 709 GVKRELQELVQYPVEHPD 762
+++E+V+ P+ HP+
Sbjct: 212 EQIEKIREVVELPMLHPE 229
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 77.4 bits (182), Expect = 1e-14
Identities = 36/89 (40%), Positives = 56/89 (62%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ LDG + V ++ ATNRP+ +DPAL R GR DR+I+I +P+ R+EIL+IH
Sbjct: 266 LLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASG 325
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCS 508
+ ++D E I G GADL ++C+
Sbjct: 326 IAKHGEIDYEAIVKLGEGFNGADLRNICT 354
Score = 64.5 bits (150), Expect = 7e-11
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARA+A+ A F + I+ K GES +R+ F A ++ P IIF+DE+D
Sbjct: 183 GTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEID 242
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
AI +R +R I L+ L
Sbjct: 243 AIGGRRFSEGTSADREIQRTLMEL 266
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +1
Query: 676 NVTWTDIGGLEGVKRELQELVQYPVEHPD 762
N++++ +GGL REL+E ++ P+ +P+
Sbjct: 135 NISYSAVGGLGDQIRELRESIELPLMNPE 163
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 77.0 bits (181), Expect = 1e-14
Identities = 37/89 (41%), Positives = 53/89 (59%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ LDG V V+ ATNR S+DPAL R GR DR+I+ +PD R I +IHT
Sbjct: 315 LLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSK 374
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCS 508
M L +DV+LE+ GAD+ ++C+
Sbjct: 375 MTLAEDVNLEEFVMTKDEFSGADIKAICT 403
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/84 (45%), Positives = 52/84 (61%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+AVAN T A F + G E++ K G+ +R+ F AD SP+I+FIDE+D
Sbjct: 232 GTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEID 291
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
A+ KR + ER I +L L
Sbjct: 292 AVGTKRYDANSGGEREIQRTMLEL 315
Score = 34.7 bits (76), Expect = 0.069
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 661 VVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
V + P ++ DIGGLE +E++E V+ P+ HP+
Sbjct: 179 VEKAPLESYADIGGLEAQIQEIKEAVELPLTHPE 212
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/89 (39%), Positives = 56/89 (62%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ LDG V ++ ATNRP+ +DPAL R GR DR+I+I +P+ R++IL+IH
Sbjct: 266 LLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAG 325
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCS 508
+ ++D E I + G GADL ++C+
Sbjct: 326 IAKHGEIDYEAIVKLAEGFNGADLRNICT 354
Score = 64.5 bits (150), Expect = 7e-11
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARA+A+ A F + I+ K GES +R+ F A ++ P IIF+DE+D
Sbjct: 183 GTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEID 242
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
AI +R +R I L+ L
Sbjct: 243 AIGGRRFSEGTSADREIQRTLMEL 266
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +1
Query: 676 NVTWTDIGGLEGVKRELQELVQYPVEHPD 762
N++++ +GGL REL+E ++ P+ +P+
Sbjct: 135 NISYSAVGGLGDQIRELRESIELPLMNPE 163
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 75.4 bits (177), Expect = 4e-14
Identities = 39/85 (45%), Positives = 54/85 (63%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG 433
LDG++ + V V AAT+RP+ +DPAL R GR DR + P RLEIL + ++ + +
Sbjct: 972 LDGVEVLTGVFVFAATSRPDLLDPALLRPGRLDRLLLCDFPSPPERLEILTVLSRKLLMA 1031
Query: 434 DDVDLEQIAAESHGHVGADLASLCS 508
DD+DLE IA + G GADL +L S
Sbjct: 1032 DDIDLEPIALMTEGFSGADLQALLS 1056
Score = 68.1 bits (159), Expect = 6e-12
Identities = 35/83 (42%), Positives = 47/83 (56%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKT I A A F + GPE+++K G SE +R F +A +P I+F DE D
Sbjct: 888 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCILFFDEFD 947
Query: 183 AIAPKREKTHGEVERRIVSQLLT 251
+IAPKR + V R+V+Q LT
Sbjct: 948 SIAPKRGHDNTGVTDRVVNQFLT 970
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +1
Query: 607 DNFRYAMTKSSPSALRE---TVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHP 759
++F AM P A+R+ + E + W D+GG+ +K ++E+++ P + P
Sbjct: 814 EDFTRAMHDFVPVAMRDITKSASEGGRLGWEDVGGVTDIKNAIKEMIELPSKFP 867
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +3
Query: 3 GTGKTLIARAVA------NETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAII 164
G+GKT++ARA A + A L++ + + L E +++P++I
Sbjct: 603 GSGKTILARAAAKYFEEQKDLLAHVILVSCSTLALEKVQHIHHVLSSVIAEGLEHAPSVI 662
Query: 165 FIDELDAIAPKREKTHG 215
+D+LD+I T G
Sbjct: 663 ILDDLDSIISSSSDTEG 679
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 75.4 bits (177), Expect = 4e-14
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++A+A+ANE GA F ++ I SK GE E N+R F A K SP IIF+DE+D
Sbjct: 458 GTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVD 517
Query: 183 AIAPKREKT-HGEVERRIVSQLLTLW 257
++ +R + E R+I ++ +T W
Sbjct: 518 SMLGQRTRVGEHEAMRKIKNEFMTHW 543
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 DGMKKSS--HVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKL 430
DG+ ++ ++V+AATNRP +D A+ R RF+R I +G+P R +ILR K
Sbjct: 544 DGLMSNAGDRILVLAATNRPFDLDEAIIR--RFERRIMVGLPSVESREKILRTLLSKEKT 601
Query: 431 GDDVDLEQIAAESHGHVGADLASLCS 508
+++D +++A + G+ G+DL + C+
Sbjct: 602 -ENLDFQELAQMTDGYSGSDLKNFCT 626
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 679 VTWTDIGGLEGVKRELQELVQYPVEHPD 762
VT+ DIG L+ K LQELV P+ PD
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPD 438
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 75.4 bits (177), Expect = 4e-14
Identities = 38/111 (34%), Positives = 70/111 (63%), Gaps = 4/111 (3%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
++ +DG++ ++V+++ TNR + +D AL R GR + +++I +PD GRL+IL+IHT
Sbjct: 351 LLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNK 410
Query: 422 MK----LGDDVDLEQIAAESHGHVGADLASLCSRQPCSRFVRRWISLTSRT 562
MK LG D++L+++AA + + GA+L + + S + R +S+ T
Sbjct: 411 MKENSFLGTDINLQELAARTKNYSGAELEGVV-KSATSYALNRQLSMDDLT 460
Score = 58.8 bits (136), Expect = 4e-09
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Frame = +3
Query: 3 GTGKTLIARAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA------- 158
GTGKTL+AR + G ++NGPE++SK GE+E N+R F +A+++
Sbjct: 260 GTGKTLMARQIGKMLNGKDPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTLGDASEL 319
Query: 159 -IIFIDELDAIAPKREKTHG--EVERRIVSQLLT 251
+I DE+DAI R T V IV+QLLT
Sbjct: 320 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 353
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 74.9 bits (176), Expect = 5e-14
Identities = 37/110 (33%), Positives = 65/110 (59%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ LDG + S+ + V+ ATNR + +D AL R GR DR+I+ P+ R +IL+IH++
Sbjct: 289 LLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRK 348
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCSRQPCSRFVRRWISLTSRTIRL 571
M L +DL++IA + +G GA+L ++C+ R + +T +
Sbjct: 349 MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEM 398
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARAVA+ T F ++G E++ K GE +R+ F A +++P+IIF+DE+D
Sbjct: 205 GTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 264
Query: 183 AIAPKR-EKTHGEVERRIVSQLLTL 254
+I R E G + + +L L
Sbjct: 265 SIGSARMESGSGNGDSEVQRTMLEL 289
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Frame = +1
Query: 544 LIDLEDDQIDAEVLN-SLAVSMDNFRYAM-----TKSSPSALRETVVEVPNVTWTDIGGL 705
++D+ D ID L S V++ N Y + +K P V +VP+ T+ IGGL
Sbjct: 108 VVDI-DKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGL 166
Query: 706 EGVKRELQELVQYPVEHPD 762
+ +E++E+++ P++HP+
Sbjct: 167 DQQIKEIKEVIELPIKHPE 185
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 74.9 bits (176), Expect = 5e-14
Identities = 37/110 (33%), Positives = 65/110 (59%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ LDG + S+ + V+ ATNR + +D AL R GR DR+I+ P+ R +IL+IH++
Sbjct: 289 LLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRK 348
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLCSRQPCSRFVRRWISLTSRTIRL 571
M L +DL++IA + +G GA+L ++C+ R + +T +
Sbjct: 349 MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEM 398
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARAVA+ T F ++G E++ K GE +R+ F A +++P+IIF+DE+D
Sbjct: 205 GTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 264
Query: 183 AIAPKR-EKTHGEVERRIVSQLLTL 254
+I R E G + + +L L
Sbjct: 265 SIGSARMESGSGNGDSEVQRTMLEL 289
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Frame = +1
Query: 544 LIDLEDDQID-AEVLNSLAVSMDNFRYAM-----TKSSPSALRETVVEVPNVTWTDIGGL 705
++D+ D ID ++ S V++ N Y + +K P V +VP+ T+ IGGL
Sbjct: 108 VVDI-DKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGL 166
Query: 706 EGVKRELQELVQYPVEHPD 762
+ +E++E+++ P++HP+
Sbjct: 167 DQQIKEIKEVIELPIKHPE 185
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 74.5 bits (175), Expect = 7e-14
Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG 433
+DG ++ V+V+A TNRP+ +D AL R GRFDR+I I PD GR +I +I+ K +KL
Sbjct: 452 MDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLD 511
Query: 434 DDVDL--EQIAAESHGHVGADLASLCS 508
+ +++AA + G GAD+A++C+
Sbjct: 512 HEPSYYSQRLAALTPGFAGADIANVCN 538
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/66 (48%), Positives = 43/66 (65%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+A A E+G F I+G + M G S +R F+EA + +P+IIFIDE+D
Sbjct: 365 GTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEID 424
Query: 183 AIAPKR 200
AI R
Sbjct: 425 AIGRAR 430
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 74.1 bits (174), Expect = 9e-14
Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG 433
+DG ++ V+V+A TNRP+ +D AL R GRFDR+I I PD GR +I +I+ K +KL
Sbjct: 458 MDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLD 517
Query: 434 DDVDL--EQIAAESHGHVGADLASLCS 508
+ +++AA + G GAD+A++C+
Sbjct: 518 HEPSYYSQRLAALTPGFAGADIANVCN 544
Score = 64.5 bits (150), Expect = 7e-11
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+A A E+ F I+G + M G S +R F+EA + +P+IIFIDE+D
Sbjct: 370 GTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEID 429
Query: 183 AIAPKR 200
AI R
Sbjct: 430 AIGRAR 435
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 73.3 bits (172), Expect = 2e-13
Identities = 34/88 (38%), Positives = 53/88 (60%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ LDG + V+AATNR + +DPAL R GR DR+I+ P R IL+IH++
Sbjct: 298 LLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRK 357
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLC 505
M + DV+ E++A + GA L ++C
Sbjct: 358 MNVHPDVNFEELARSTDDFNGAQLKAVC 385
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARA A +T A F + GP+++ G+ +R AF+ A + +P IIFIDE+D
Sbjct: 215 GTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEID 274
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
AI KR + +R + +L L
Sbjct: 275 AIGTKRFDSEVSGDREVQRTMLEL 298
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 661 VVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
V E P + DIGGLE +EL E + P+ H +
Sbjct: 162 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKE 195
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/84 (45%), Positives = 50/84 (59%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++A+AVAN T A F + G E + K GE +R F A +N+PAIIFIDE+D
Sbjct: 199 GTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVD 258
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
AIA R +R + L+ L
Sbjct: 259 AIATARFDAQTGADREVQRILMEL 282
Score = 68.5 bits (160), Expect = 5e-12
Identities = 31/88 (35%), Positives = 55/88 (62%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ +DG ++ +V V+ ATNR +++DPAL R GR DR+I+ +PD + + ++ T
Sbjct: 282 LLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSK 341
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLC 505
M L D+VDLE + A++A++C
Sbjct: 342 MNLSDEVDLEDYVSRPDKISAAEIAAIC 369
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +1
Query: 634 SSPSALRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEH 756
SS S L ++ E P+V++ DIGG + K+E++E V+ P+ H
Sbjct: 139 SSISLLSQS--EKPDVSYNDIGGCDIQKQEIREAVELPLTH 177
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 72.5 bits (170), Expect = 3e-13
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++A+A+A E GA F ++ I SK GE E N+R F A K SP IIF+DE+D
Sbjct: 565 GTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVD 624
Query: 183 AIAPKREKT-HGEVERRIVSQLLTLW 257
++ +R + E R+I ++ ++ W
Sbjct: 625 SMLGQRTRVGEHEAMRKIKNEFMSHW 650
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 DGM--KKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKL 430
DG+ K ++V+AATNRP +D A+ R RF+R I +G+P R +ILR K+
Sbjct: 651 DGLMTKPGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPAVENREKILRTLLAKEKV 708
Query: 431 GDDVDLEQIAAESHGHVGADLASLCS 508
+++D +++A + G+ G+DL +LC+
Sbjct: 709 DENLDYKELAMMTEGYTGSDLKNLCT 734
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 676 NVTWTDIGGLEGVKRELQELVQYPVEHPD 762
NVT+ DIG L+ +K LQELV P+ PD
Sbjct: 517 NVTFKDIGALDEIKESLQELVMLPLRRPD 545
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 72.5 bits (170), Expect = 3e-13
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++A+A+A E GA F ++ I SK GE E N+R F A K SP IIF+DE+D
Sbjct: 560 GTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVD 619
Query: 183 AIAPKREKT-HGEVERRIVSQLLTLW 257
++ +R + E R+I ++ ++ W
Sbjct: 620 SMLGQRTRVGEHEAMRKIKNEFMSHW 645
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 DGM--KKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKL 430
DG+ K ++V+AATNRP +D A+ R RF+R I +G+P R +ILR K+
Sbjct: 646 DGLMTKPGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPAVENREKILRTLLAKEKV 703
Query: 431 GDDVDLEQIAAESHGHVGADLASLCS 508
+++D +++A + G+ G+DL +LC+
Sbjct: 704 DENLDYKELAMMTEGYTGSDLKNLCT 729
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 676 NVTWTDIGGLEGVKRELQELVQYPVEHPD 762
NVT+ DIG L+ +K LQELV P+ PD
Sbjct: 512 NVTFKDIGALDEIKESLQELVMLPLRRPD 540
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/88 (38%), Positives = 53/88 (60%)
Frame = +2
Query: 242 VIDALDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 421
+++ LDG + V+AATNR + +DPAL R GR DR+I+ P R IL+IH++
Sbjct: 297 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRK 356
Query: 422 MKLGDDVDLEQIAAESHGHVGADLASLC 505
M + DV+ E++A + GA L ++C
Sbjct: 357 MNVNADVNFEELARSTDDFNGAQLKAVC 384
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/84 (42%), Positives = 50/84 (59%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+ARA A +T A F + GP+++ G+ +R AF A + SP IIFIDE+D
Sbjct: 214 GTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEID 273
Query: 183 AIAPKREKTHGEVERRIVSQLLTL 254
AI KR + +R + +L L
Sbjct: 274 AIGTKRFDSEVSGDREVQRTMLEL 297
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 661 VVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
V E P + DIGGLE +EL E + P+ H +
Sbjct: 161 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKE 194
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 71.7 bits (168), Expect = 5e-13
Identities = 35/83 (42%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGK+ +A+AVA E + FF ++ +++SK GESE + FE A +++P+IIF+DE+D
Sbjct: 175 GTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEID 234
Query: 183 AIAPKR-EKTHGEVERRIVSQLL 248
++ R E E RRI ++LL
Sbjct: 235 SLCGTRGEGNESEASRRIKTELL 257
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +2
Query: 281 VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLEQI 457
V+V+AATN P ++D A+RR RFD+ I I +P+A R + ++H + + D E +
Sbjct: 270 VLVLAATNTPYALDQAIRR--RFDKRIYIPLPEAKARQHMFKVHLGDTPHNLTEPDFEYL 327
Query: 458 AAESHGHVGADLASLCSRQPCSRFVRR 538
++ G G+D+ S+C + VR+
Sbjct: 328 GQKTEGFSGSDV-SVCVKDVLFEPVRK 353
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 661 VVEVPNVTWTDIGGLEGVKRELQELVQYPVEHP 759
V E PN+ W+D+ GLE K+ LQE V PV+ P
Sbjct: 123 VREKPNIKWSDVAGLESAKQALQEAVILPVKFP 155
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 70.9 bits (166), Expect = 9e-13
Identities = 32/82 (39%), Positives = 52/82 (63%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
G GKT++A+AVA+E+ A FF ++ + SK GE+E ++ F+ A P++IF+DE+D
Sbjct: 259 GNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLVKTLFQVAISRQPSVIFMDEID 318
Query: 183 AIAPKREKTHGEVERRIVSQLL 248
+I R + E RR+ S+ L
Sbjct: 319 SIMSTRSTSENEASRRLKSEFL 340
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +2
Query: 281 VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLEQI 457
VI++ ATN+P +D A+ R R + I + +PD+ R + + K D D+++I
Sbjct: 354 VIIIGATNKPQELDDAVLR--RLVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSDGDIDKI 411
Query: 458 AAESHGHVGADLASLC 505
E+ G+ G+DL +LC
Sbjct: 412 VKETEGYSGSDLQALC 427
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 649 LRETVVE-VPNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
+ T+V+ P+V W D+ GL G K+ L E+V P + D
Sbjct: 202 INTTIVDRSPSVKWDDVAGLNGAKQALLEMVILPAKRRD 240
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 68.5 bits (160), Expect = 5e-12
Identities = 32/85 (37%), Positives = 51/85 (60%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++A+A+A E+GA F + +MSK G+++ + F A K PAIIFIDE++
Sbjct: 129 GTGKTMLAKAIAKESGAVFINVRVSNLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVE 188
Query: 183 AIAPKREKTHGEVERRIVSQLLTLW 257
+ +R T E + ++ + LW
Sbjct: 189 SFLGQRRSTDHEAMANMKTEFMALW 213
Score = 67.7 bits (158), Expect = 8e-12
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +2
Query: 257 DGMKKSSH--VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKL 430
DG H V+V+AATNRP+ +D A+ R R + +IGIPD R EIL++ K ++
Sbjct: 214 DGFSTDPHARVMVLAATNRPSELDEAILR--RLPQAFEIGIPDRRERAEILKVTLKGERV 271
Query: 431 GDDVDLEQIAAESHGHVGADLASLCSR 511
D+D + IA G+ G+D+ LC +
Sbjct: 272 EPDIDFDHIARLCEGYTGSDIFELCKK 298
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 676 NVTWTDIGGLEGVKRELQELVQYPVEHPD 762
+V + IGGLE +K+ L ELV P++ P+
Sbjct: 80 DVEFGSIGGLETIKQALYELVILPLKRPE 108
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++A+AVA E A F I+ I SK GE E ++ F A K SP++IF+DE+D
Sbjct: 865 GTGKTMLAKAVAKEADANFINISMSSITSKWFGEGEKYVKAVFSLASKMSPSVIFVDEVD 924
Query: 183 AIAPKRE-KTHGEVERRIVSQLLTLW 257
++ +RE E R+I ++ + W
Sbjct: 925 SMLGRREHPREHEASRKIKNEFMMHW 950
Score = 62.5 bits (145), Expect = 3e-10
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +2
Query: 257 DGM--KKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKL 430
DG+ ++ V+V+AATNRP +D A+ R R R + +G+PD + R IL++ L
Sbjct: 951 DGLTTQERERVLVLAATNRPFDLDEAVIR--RLPRRLMVGLPDTSNRAFILKVILAKEDL 1008
Query: 431 GDDVDLEQIAAESHGHVGADLASLC 505
D+D+ +IA+ ++G+ G+DL +LC
Sbjct: 1009 SPDLDIGEIASMTNGYSGSDLKNLC 1033
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 676 NVTWTDIGGLEGVKRELQELVQYPVEHPD 762
+VT+ DIG LE VK L+ELV P++ P+
Sbjct: 816 DVTFDDIGALEKVKDILKELVMLPLQRPE 844
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 68.5 bits (160), Expect = 5e-12
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++A+AVA E GA F I+ I SK GE E ++ F A K +P++IF+DE+D
Sbjct: 1008 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVD 1067
Query: 183 AIAPKREKT-HGEVERRIVSQLLTLW 257
++ +RE E R++ ++ + W
Sbjct: 1068 SMLGRRENPGEHEAMRKMKNEFMVNW 1093
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Frame = +2
Query: 257 DGM--KKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKL 430
DG+ K V+V+AATNRP +D A+ R R R + + +PDAT R +IL + ++
Sbjct: 1094 DGLRTKDRERVLVLAATNRPFDLDEAVIR--RLPRRLMVNLPDATNRSKILSVILAKEEI 1151
Query: 431 GDDVDLEQIAAESHGHVGADLASLC 505
DVDLE IA + G+ G+DL +LC
Sbjct: 1152 APDVDLEAIANMTDGYSGSDLKNLC 1176
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 679 VTWTDIGGLEGVKRELQELVQYPVEHPD 762
V++ DIG LE VK L+ELV P++ P+
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPE 987
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 68.5 bits (160), Expect = 5e-12
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT+I +A+A E A FF I+ + SK GE E +R F A PA+IF+DE+D
Sbjct: 53 GTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEID 112
Query: 183 AIAPKREKTHGEVE--RRIVSQLL 248
++ +R K+ GE E RR+ +Q L
Sbjct: 113 SLLSQR-KSDGEHESSRRLKTQFL 135
Score = 41.5 bits (93), Expect = 6e-04
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Frame = +2
Query: 272 SSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN---MKLGDDV 442
S ++++ ATNRP +D A RR R + + I +P + R I++ K L DD
Sbjct: 145 SEQILLIGATNRPQELDEAARR--RLTKRLYIPLPSSEARAWIIQNLLKKDGLFTLSDD- 201
Query: 443 DLEQIAAESHGHVGADLASL---CSRQPCSRFVRRWISLTSRT 562
D+ I + G+ G+D+ +L + P ++R I +T+ T
Sbjct: 202 DMNIICNLTEGYSGSDMKNLVKDATMGPLREALKRGIDITNLT 244
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 673 PNVTWTDIGGLEGVKRELQELVQYPVEHPD 762
PNV W DI GLE K+ + E+V +P+ PD
Sbjct: 5 PNVRWDDIAGLEHAKKCVTEMVIWPLLRPD 34
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++A+AVA E FF I+ ++SK G+SE +R F+ A ++P+ IF+DE+D
Sbjct: 155 GTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEID 214
Query: 183 AIAPKR---EKTHGEVERRIVSQLL 248
AI +R ++ E RR+ ++LL
Sbjct: 215 AIISQRGGEGRSEHEASRRLKTELL 239
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/100 (25%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Frame = +2
Query: 254 LDGMKKSSHVI-VMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKL 430
+DG++K++ ++ V+AATN P +D A+ R R ++ I + +PD R + + +
Sbjct: 242 MDGLQKTNELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDPEARRGMFEMLIPSQPG 299
Query: 431 GDDVDLEQIAAESHGHVGADLASLCSRQPCSRFVRRWISL 550
+ + + + +S G+ G+D+ LC ++ + +RR +++
Sbjct: 300 DEPLPHDVLVEKSEGYSGSDIRILC-KEAAMQPLRRTLAI 338
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 613 FRYAMTKSSPSALRETVVEV-PNVTWTDIGGLEGVKRELQELVQYPVEHP 759
F A T++ +L ++ PN+ W I GLE K+ L+E V P+++P
Sbjct: 86 FESAETRTLAESLSRDIIRGNPNIKWESIKGLENAKKLLKEAVVMPIKYP 135
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++A+AVA E FF I+ ++SK G+SE +R F+ A ++P+ IF+DE+D
Sbjct: 146 GTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEID 205
Query: 183 AIAPKR---EKTHGEVERRIVSQLL 248
AI +R ++ E RR+ ++LL
Sbjct: 206 AIISQRGGEGRSEHEASRRLKTELL 230
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/100 (25%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Frame = +2
Query: 254 LDGMKKSSHVI-VMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKL 430
+DG++K++ ++ V+AATN P +D A+ R R ++ I + +PD R + + +
Sbjct: 233 MDGLQKTNELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDPEARRGMFEMLIPSQPG 290
Query: 431 GDDVDLEQIAAESHGHVGADLASLCSRQPCSRFVRRWISL 550
+ + + + +S G+ G+D+ LC ++ + +RR +++
Sbjct: 291 DEPLPHDVLVEKSEGYSGSDIRILC-KEAAMQPLRRTLAI 329
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 613 FRYAMTKSSPSALRETVVEV-PNVTWTDIGGLEGVKRELQELVQYPVEHP 759
F A T++ +L ++ PN+ W I GLE K+ L+E V P+++P
Sbjct: 77 FESAETRTLAESLSRDIIRGNPNIKWESIKGLENAKKLLKEAVVMPIKYP 126
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 68.1 bits (159), Expect = 6e-12
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+AVA E G FF ++ + SK GESE +R F+ A +P+ IFIDE+D
Sbjct: 282 GTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEID 341
Query: 183 AIAPKREKT-HGEVERRIVSQLL 248
++ R + E RR+ S+LL
Sbjct: 342 SLCNSRGGSGEHESSRRVKSELL 364
Score = 62.1 bits (144), Expect = 4e-10
Identities = 37/101 (36%), Positives = 60/101 (59%)
Frame = +2
Query: 257 DGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGD 436
DG +K V+V+AATN P ID ALRR R ++ I I +PD R ++ I+ + +++
Sbjct: 378 DGSRKI--VMVLAATNFPWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVAS 433
Query: 437 DVDLEQIAAESHGHVGADLASLCSRQPCSRFVRRWISLTSR 559
DV++E +A + G+ G DL ++C R +RR I+ +R
Sbjct: 434 DVNIEDVARRTEGYSGDDLTNVC-RDASMNGMRRKIAGKTR 473
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 68.1 bits (159), Expect = 6e-12
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++A+AVA E GA F I+ I SK GE E ++ F A K +P++IF+DE+D
Sbjct: 995 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVD 1054
Query: 183 AIAPKREKT-HGEVERRIVSQLLTLW 257
++ +RE E R++ ++ + W
Sbjct: 1055 SMLGRRENPGEHEAMRKMKNEFMINW 1080
Score = 64.1 bits (149), Expect = 1e-10
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Frame = +2
Query: 257 DGM--KKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKL 430
DG+ K V+V+AATNRP +D A+ R R R + + +PD+ R +IL + ++
Sbjct: 1081 DGLRTKDKERVLVLAATNRPFDLDEAVIR--RLPRRLMVNLPDSANRSKILSVILAKEEM 1138
Query: 431 GDDVDLEQIAAESHGHVGADLASLC 505
+DVDLE IA + G+ G+DL +LC
Sbjct: 1139 AEDVDLEAIANMTDGYSGSDLKNLC 1163
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 679 VTWTDIGGLEGVKRELQELVQYPVEHPD 762
V+++DIG LE VK L+ELV P++ P+
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPE 974
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 67.7 bits (158), Expect = 8e-12
Identities = 35/92 (38%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Frame = +2
Query: 242 VIDALDGMK-KSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 418
++ +DG K +S V+V+ ATNR + +DPAL R GRFD+ I +G+P GRL IL++H +
Sbjct: 443 ILTEMDGFKVTTSQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHAR 502
Query: 419 N--MKLGDDVD--LEQIAAESHGHVGADLASL 502
N + D+ + L+++A + GA+L ++
Sbjct: 503 NKFFRSEDEKEELLQEVAENTEDFTGAELQNV 534
Score = 65.7 bits (153), Expect = 3e-11
Identities = 30/66 (45%), Positives = 42/66 (63%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+A+A E G FF NG + + G + S ++ F + +P+IIFIDE+D
Sbjct: 359 GTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASSRSYAPSIIFIDEID 418
Query: 183 AIAPKR 200
AI KR
Sbjct: 419 AIGSKR 424
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 667 EVPNVTWTDIGGLEGVKRELQELVQ 741
E VT+ D G E +KRELQE+V+
Sbjct: 309 EKTGVTFDDFAGQEYIKRELQEIVR 333
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 67.7 bits (158), Expect = 8e-12
Identities = 32/85 (37%), Positives = 50/85 (58%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++A+A+A E+ A F + +MSK G+++ + F A K PAIIFIDE+D
Sbjct: 132 GTGKTMLAKAIARESEAVFINVKVSNLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVD 191
Query: 183 AIAPKREKTHGEVERRIVSQLLTLW 257
+ +R T E + ++ + LW
Sbjct: 192 SFLGQRRSTDNEAMSNMKTEFMALW 216
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/81 (34%), Positives = 51/81 (62%)
Frame = +2
Query: 269 KSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL 448
+++ V+V+AATNRP+ +D A+ R RF + +IG+PD R +IL++ K + D++
Sbjct: 223 QNARVMVLAATNRPSELDEAILR--RFPQSFEIGMPDCQERAQILKVVLKGESVESDINY 280
Query: 449 EQIAAESHGHVGADLASLCSR 511
++IA + G+D+ LC +
Sbjct: 281 DRIARLCEDYTGSDIFELCKK 301
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 676 NVTWTDIGGLEGVKRELQELVQYPVEHPD 762
+V + IGGLE +K+ L ELV P++ P+
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPE 111
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 67.3 bits (157), Expect = 1e-11
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+A+A E GA F I G + SK G++E + F A K +P IIF+DE+D
Sbjct: 396 GTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVIIFVDEID 455
Query: 183 AIAPKR-EKTHGEVERRIVSQLLTLW 257
++ R + E RR+ ++ + W
Sbjct: 456 SLLGARGGSSEHEATRRMRNEFMAAW 481
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +2
Query: 251 ALDGM--KKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNM 424
A DG+ K S ++++ ATNRP +D A+ R R R I + +PDA RL+IL+I
Sbjct: 480 AWDGLRSKDSQRILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRLKILKIFLTPE 537
Query: 425 KLGDDVDLEQIAAESHGHVGADLASLC 505
L D E++A E+ G+ G+DL +LC
Sbjct: 538 NLESDFQFEKLAKETEGYSGSDLKNLC 564
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 679 VTWTDIGGLEGVKRELQELVQYPVEHPD 762
V + DIG LE VK+ L ELV P+ P+
Sbjct: 348 VKFEDIGALEDVKKALNELVILPMRRPE 375
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKTL+A+A+A E GA F I G + SK G++E + F A K +P IIF+DE+D
Sbjct: 195 GTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVD 254
Query: 183 AIAPKREKT-HGEVERRIVSQLLTLW 257
++ R E RR+ ++ + W
Sbjct: 255 SLLGARGGAFEHEATRRMRNEFMAAW 280
Score = 62.1 bits (144), Expect = 4e-10
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +2
Query: 251 ALDGM--KKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNM 424
A DG+ K S ++++ ATNRP +D A+ R R R I + +PDA RL+IL+I
Sbjct: 279 AWDGLRSKDSQRILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRLKILKIFLTPE 336
Query: 425 KLGDDVDLEQIAAESHGHVGADLASLC 505
L + +++A E+ G+ G+DL +LC
Sbjct: 337 NLETGFEFDKLAKETEGYSGSDLKNLC 363
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 679 VTWTDIGGLEGVKRELQELVQYPVEHPD 762
V + DIG LE VK+ L ELV P+ P+
Sbjct: 147 VKFDDIGALEHVKKTLNELVILPMRRPE 174
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 64.9 bits (151), Expect = 6e-11
Identities = 30/83 (36%), Positives = 47/83 (56%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG 433
+D VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ L
Sbjct: 627 IDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLA 686
Query: 434 DDVDLEQIAAESHGHVGADLASL 502
+D+D ++ + G GAD+ +L
Sbjct: 687 EDIDFGKLVFRTVGFSGADIRNL 709
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESNLRKAFEEADKNSPAIIFIDEL 179
GTGKTL AR +A E+G F +G E S+ +G ++ N + F A +N+PA +F+DE+
Sbjct: 536 GTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAKIN--EMFSIARRNAPAFVFVDEI 593
Query: 180 DAIAPKREK 206
DAIA + +
Sbjct: 594 DAIAGRHAR 602
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 63.3 bits (147), Expect = 2e-10
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK-NSPAIIFIDEL 179
GTGKT AR +AN+ G + +MSK GESE L F +A++ AIIF+DE+
Sbjct: 371 GTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGAVFSQANELPDGAIIFLDEI 430
Query: 180 DAIAPKREKTHGEVERRIVSQLL 248
DA A R+ E RR++S LL
Sbjct: 431 DAFAISRDSEMHEATRRVLSVLL 453
Score = 52.0 bits (119), Expect = 4e-07
Identities = 31/97 (31%), Positives = 46/97 (47%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG 433
+DG ++ V+V+AATNR +DPAL RFD I +PD R EI+ + K +
Sbjct: 456 IDGFEQEKKVVVIAATNRKQDLDPAL--ISRFDSMIMFDLPDLQTRQEIIAQYAKQLSKP 513
Query: 434 DDVDLEQIAAESHGHVGADLASLCSRQPCSRFVRRWI 544
+ V L Q G D+ R S+ + +I
Sbjct: 514 ELVQLAQATEAMSGRDIRDVCQGAERTWASKIINLYI 550
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family
Length = 1025
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +2
Query: 257 DGMK--KSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKL 430
DG++ + V+V+AATNRP +D A+ R R + +G+PDA R +IL++ L
Sbjct: 854 DGLRTNEKERVLVLAATNRPFDLDEAVIR--RLPHRLMVGLPDARSRSKILKVILSKEDL 911
Query: 431 GDDVDLEQIAAESHGHVGADLASLC 505
D D++++A+ ++G+ G DL +LC
Sbjct: 912 SPDFDIDEVASMTNGYSGNDLKNLC 936
Score = 52.0 bits (119), Expect = 4e-07
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELD 182
GTGKT++A+AVA E GA LIN MS+ E E ++ F A K SP+IIF+DE++
Sbjct: 780 GTGKTMLAKAVATEAGAN--LINMS--MSRWFSEGEKYVKAVFSLASKISPSIIFLDEVE 835
Query: 183 AIAPK-REKTHGE 218
++ + R KT E
Sbjct: 836 SMLHRYRLKTKNE 848
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 679 VTWTDIGGLEGVKRELQELVQYPVEHPD 762
VT+ DIG LE VK L+ELV P + P+
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPE 759
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK-NSPAIIFIDEL 179
GTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+ A K N ++FIDE
Sbjct: 380 GTGKTMVAREIARKSGLDYAMMTGGDV-APLGSQAVTKIHQIFDWAKKSNKGLLLFIDEA 438
Query: 180 DAIAPKREKTH-GEVERRIVSQLL 248
DA +R T+ E +R ++ LL
Sbjct: 439 DAFLCERNSTYMSEAQRSALNALL 462
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK-NSPAIIFIDEL 179
GTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+ A K N ++FIDE
Sbjct: 395 GTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKSNKGLLLFIDEA 453
Query: 180 DAIAPKREKTH-GEVERRIVSQLL 248
DA +R T+ E +R ++ LL
Sbjct: 454 DAFLCERNSTYMSEAQRSALNALL 477
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +2
Query: 269 KSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDD 439
+S ++++ ATNRP +D A+ R D I+ +P R ++L+++ +GDD
Sbjct: 483 QSRDIVLVLATNRPGDLDSAVT--DRIDEVIEFPLPGEEERFKLLKLYLNKYLMGDD 537
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA-IIFIDEL 179
GTGKT+ AR +A +G + L+ G ++ + L ++ + + + F+ + K+ ++FIDE
Sbjct: 408 GTGKTMAARELARRSGLDYALMTGGDV-APLGAQAVTKIHQLFDWSKKSKRGLLLFIDEA 466
Query: 180 DAIAPKREKTH-GEVERRIVSQLL 248
DA +R KT+ E +R ++ LL
Sbjct: 467 DAFLCERNKTYMSEAQRSALNALL 490
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 269 KSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIH 412
+S +++ ATNRP +D A+ R D ++ +P R ++L ++
Sbjct: 496 QSKDIVLALATNRPGDLDSAVA--DRIDETLEFPLPGEEERFKLLNLY 541
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA-IIFIDEL 179
GTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ K+ ++FIDE
Sbjct: 407 GTGKTMAARELARKSGLDYALMTGGDV-APLGAQAVTKIHELFDWGKKSKRGLLLFIDEA 465
Query: 180 DAIAPKREKTH-GEVERRIVSQLL 248
DA +R KT+ E +R ++ LL
Sbjct: 466 DAFLCERNKTYMSEAQRSALNALL 489
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 269 KSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIH 412
+S +++ ATNRP +D A+ R D ++ +P R ++L ++
Sbjct: 495 QSKDIVLALATNRPGDLDSAVA--DRVDEVLEFPLPGEEERFKLLNLY 540
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKL-AGESESNLRKAFEEADKNSPAIIFIDEL 179
GTGKT +A A+A E + E+ + L G+S +N+R+ F+ A +P IIF+++
Sbjct: 467 GTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSAANVRELFQTARDLAPVIIFVEDF 526
Query: 180 DAIAPKREK---THGEVERRIVSQLL 248
D A R K T + ++QLL
Sbjct: 527 DLFAGVRGKFVHTKQQDHESFINQLL 552
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +2
Query: 254 LDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILR---IHTKNM 424
LDG +K V++MA T ID ALRR GR DR + P R IL T +
Sbjct: 555 LDGFEKQDGVVLMATTRNHKQIDEALRRPGRMDRVFHLQSPTEMERERILHNAAEETMDR 614
Query: 425 KLGDDVDLEQIAAES 469
+L D VD +++ ++
Sbjct: 615 ELVDLVDWRKVSEKT 629
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 667 EVPNVTWTDIGGLEGVKRELQELVQYPVEHP 759
E PNV WT + GLE K+ L+E V PV P
Sbjct: 86 EKPNVKWTVVAGLESAKQALKEAVILPVNFP 116
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 667 EVPNVTWTDIGGLEGVKRELQELVQYPVEHP 759
E PNV WT + GLE K+ L+E V PV P
Sbjct: 86 EKPNVKWTVVAGLESAKQALKEAVILPVNFP 116
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 35.1 bits (77), Expect = 0.052
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEADKNSPA----II 164
G+GKTL+A+ +A F + + + + GE ES L K AD N A I+
Sbjct: 233 GSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVADYNVAAAQQGIV 292
Query: 165 FIDELDAIAPKRE 203
+IDE+D I K E
Sbjct: 293 YIDEVDKITKKAE 305
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSK--LAGESESNLRKAFEEADKNSPA----II 164
G+GKTL+A+ +A F + + + + + ES L K A+ N A I+
Sbjct: 318 GSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTVAEFNVQAAQQGIV 377
Query: 165 FIDELDAIAPKRE 203
+IDE+D I K E
Sbjct: 378 YIDEVDKITKKAE 390
>At3g20410.1 68416.m02585 calmodulin-domain protein kinase isoform 9
(CPK9) identical to calmodulin-domain protein kinase
CDPK isoform 9 [Arabidopsis thaliana]
gi|1399265|gb|AAB03242
Length = 541
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 102 ESESNLRKAFEEADKNSPAIIFIDELDA 185
ES NL KAF+ DK+S I IDEL++
Sbjct: 464 ESNENLYKAFQHFDKDSSGYITIDELES 491
>At1g25230.1 68414.m03131 purple acid phosphatase family protein
contains Pfam profile: PF00149 calcineurin-like
phosphoesterase; similar to purple acid phosphatase
(GI:20257479) [Arabidopsis thaliana]
Length = 339
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -3
Query: 609 IHGDSQRIENLCVNLIVLEVNEIHLLTNLLQGCLEHRDARSAP 481
IHG+++ +E+L L +LE N++ L N CL+H +P
Sbjct: 226 IHGNTKELESLL--LPILEANKVDLYMNGHDHCLQHISTSQSP 266
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Frame = +3
Query: 3 GTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKAFEEADK 146
G GKT IA +A +G I G ++++ K GE E L+K EE +
Sbjct: 305 GVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIRQ 364
Query: 147 NSPAIIFIDELDAI 188
+ I+FIDE+ +
Sbjct: 365 SDEIILFIDEVHTL 378
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 423 MFLVCMRRISRRPVASGMPMSISRSNRPKRRSAGSMEFGRFVAAITITW 277
+ L CMR+ S +P S+R R AGS RF+ + + W
Sbjct: 174 LVLACMRKTSNPDELPSLPNQNRSSSRSSRLMAGSRGDSRFLWLVMVIW 222
>At2g41860.2 68415.m05174 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 7 [Arabidopsis thaliana]
gi|1399277|gb|AAB03247
Length = 530
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 105 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIV 236
++ +L+KAF DKN I I+EL DA+A + T EV I+
Sbjct: 428 NDEHLKKAFTFFDKNKSGYIEIEELRDALADDVDTTSEEVVEAII 472
>At2g41860.1 68415.m05173 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 7 [Arabidopsis thaliana]
gi|1399277|gb|AAB03247
Length = 425
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 105 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIV 236
++ +L+KAF DKN I I+EL DA+A + T EV I+
Sbjct: 323 NDEHLKKAFTFFDKNKSGYIEIEELRDALADDVDTTSEEVVEAII 367
>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 492
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 524 RFVRRWISLTSRTIRLTQRFSILWLSPW 607
RFV+RW+ + S RLT +W+S W
Sbjct: 445 RFVKRWVEILSEP-RLTHEIRGIWISYW 471
>At5g66770.1 68418.m08416 scarecrow transcription factor family
protein
Length = 584
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 754 VRP-DTARVLGVHASLPPARRCRSTSRWELPPLSHVTPTE 638
V+P D RV+ + LPP +S +PPL+H +PT+
Sbjct: 159 VQPSDLNRVIDTSSPLPPPTLWPPSSPLSIPPLTHESPTK 198
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEADKN----SPAII 164
G+GKTL+A+ +A F + + + + GE ES L K + + N I+
Sbjct: 272 GSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGEDVESILYKLYVVSGCNVEEAQRGIV 331
Query: 165 FIDELDAIAPKREKTHG 215
+IDE+D + K ++G
Sbjct: 332 YIDEVDKMTMKSHSSNG 348
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 87 SKLAGESESNLRKAFEEADKNSPAIIFIDELDAI 188
+K GE E L+K EE ++ I+FIDE+ +
Sbjct: 366 TKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTL 399
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 63 LINGPEIMSKLAGESESNLRKAFEEADKNS--PAIIFIDELDAIAPKREKTHGEVERRI 233
+I G ++ S + E+E +RK+ E D +S P ++F+ ++ AI K G R+
Sbjct: 367 IIGGDDVDSSVLAEAEL-VRKSIEACDSSSDSPCVVFVSKMFAIPMKMIPQDGNHRERM 424
>At5g44320.1 68418.m05427 eukaryotic translation initiation factor 3
subunit 7, putative / eIF-3 zeta, putative / eIF3d,
putative similar to initiation factor 3d [Arabidopsis
thaliana] GI:12407755, SP|O15371 Eukaryotic translation
initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
(eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)
Length = 588
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 347 FDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLEQIAAESHGHVGADLASLCSRQPCSR 526
+DR D P A RLE + + + DD+ + ++A E V A A L + R
Sbjct: 220 YDRSFDRITPKADRRLERFKNRSFKVTTSDDLVIRRLAKEDKATVFATDAILAALMCAPR 279
Query: 527 FVRRW 541
V W
Sbjct: 280 SVYSW 284
>At2g34440.1 68415.m04225 MADS-box family protein similar to
SP|Q9XGJ4 MADS box protein GGM13 {Gnetum gnemon};
contains Pfam profile PF00319: SRF-type transcription
factor (DNA-binding and dimerisation domain)
Length = 172
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 63 LINGPEIMSKLAGE-SESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRI 233
L+N K GE S+ L A +E K S + +DEL+ + + HG +E ++
Sbjct: 100 LLNQEVEAEKERGEKSQEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQV 157
>At1g61950.1 68414.m06988 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase GI:3283996 from [Nicotiana tabacum]; contains
protein kinase domain, Pfam:PF00069; contains EF hand
domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 551
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +3
Query: 12 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIA 191
K L+ A + G ++ M++ E E NL KAF+ DK++ I EL+
Sbjct: 442 KQLLEDADVDGNGTIDYIEFISATMNRFRVEREDNLFKAFQHFDKDNSGFISRQELETAM 501
Query: 192 PKREKTHGEVERRIVSQL 245
+ + + I+S++
Sbjct: 502 KEYNMGDDIMIKEIISEV 519
>At1g50700.1 68414.m05701 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 9 [Arabidopsis thaliana]
gi|1399265|gb|AAB03242
Length = 521
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 102 ESESNLRKAFEEADKNSPAIIFIDELDA 185
ES N+ KAF+ DK+ I DEL+A
Sbjct: 446 ESNENVYKAFQHFDKDGSGYITTDELEA 473
>At5g08260.1 68418.m00971 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II chains A and B
(SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
carboxypeptidase D - Triticum aestivum, PIR:A29639
Length = 480
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 515 PCSRFVRRWISLTSRTIRLTQRFSILWLSPWITSG 619
PCS ++RW S I + Q+ L WI SG
Sbjct: 362 PCSGVIKRWSDAPSTMIPIIQKLLTGGLRIWIYSG 396
>At2g39730.3 68415.m04879 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 441
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----DKNSPAIIFI 170
G GK+ V + G +++ E+ S AGE +R+ + EA K +FI
Sbjct: 168 GQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFI 227
Query: 171 DELDA 185
++LDA
Sbjct: 228 NDLDA 232
>At2g39730.2 68415.m04878 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 446
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----DKNSPAIIFI 170
G GK+ V + G +++ E+ S AGE +R+ + EA K +FI
Sbjct: 168 GQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFI 227
Query: 171 DELDA 185
++LDA
Sbjct: 228 NDLDA 232
>At2g39730.1 68415.m04877 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 474
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +3
Query: 3 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----DKNSPAIIFI 170
G GK+ V + G +++ E+ S AGE +R+ + EA K +FI
Sbjct: 168 GQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFI 227
Query: 171 DELDA 185
++LDA
Sbjct: 228 NDLDA 232
>At1g05990.1 68414.m00627 calcium-binding protein, putative strong
similarity to calcium-binding protein [Lotus japonicus]
GI:18413495; contains INTERPRO:IPR002048 calcium-binding
EF-hand domain
Length = 150
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 102 ESESNLRKAFEEADKNSPAIIFIDELDAI 188
E E ++++AF D+N I +DEL A+
Sbjct: 75 EEEEDMKEAFNVFDQNGDGFITVDELKAV 103
>At4g15180.1 68417.m02328 SET domain-containing protein contains Pfam
profile PF00856: SET domain
Length = 2326
Score = 27.9 bits (59), Expect = 7.9
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Frame = +1
Query: 505 LEAALQQIREKMDLIDLEDDQIDAEV---------LNSLAVSMDNFRYAM------TKSS 639
L+ L++ R+ I L+ ++ DAEV L +LAV++D RY M K++
Sbjct: 2003 LKHNLEEKRKYFSDIHLDVEKSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRHVFGDPKNA 2062
Query: 640 PSAL-RETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPDN 765
P L R T E + W G L V LQ L + E P N
Sbjct: 2063 PPPLERLTPEETVSFVWNGDGSL--VDELLQSLSPHLEEGPLN 2103
>At1g21550.1 68414.m02695 calcium-binding protein, putative contains
similarity to calcium-binding protein GB:CAB63264
GI:6580549 from [Lotus japonicus]
Length = 155
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 111 SNLRKAFEEADKNSPAIIFIDELDAIAPK---REKTHGEVERRIVSQLLTL 254
++LR+ F+ DKN ++ +DEL I K E T E+E + Q L L
Sbjct: 9 NDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDL 59
>At1g13280.1 68414.m01542 allene oxide cyclase family protein
similar to ERD12 [GI:15320414], allene oxide cyclase
GI:8977961 from [Lycopersicon esculentum]; contains Pfam
profile PF06351: Allene oxide cyclase
Length = 254
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 9 GKTLIARAVANETGAFFFLI--NGPEIMSKLAGESESNLRKAFEEADKNSPAII 164
G + AR+ + TG FF I + S+ E N+ + F E D+NSPA++
Sbjct: 48 GLSTRARSTTSSTGGFFRTICSSSSNDYSRPTKIQELNVYE-FNEGDRNSPAVL 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,500,049
Number of Sequences: 28952
Number of extensions: 302680
Number of successful extensions: 1306
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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