Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0710.Seq
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    29   0.55 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    28   1.7  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   2.9  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   5.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   6.8  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   9.0  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   9.0  

>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 333 SCSVPGMPLPVPPRTRQMTELKEP*QHNSIDSFHN*SLAGDFCISD 196
           SC+VPG+  P+P  TR  +    P  HN  + F + SL  D  +S+
Sbjct: 397 SCAVPGILNPIPLMTRSQSHRLIP--HNFGNRFKDGSLRTDIPLSE 440


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 367  PPSMPWKRNWLRKPRQPVPVDTASLPPPTTI 459
            PPS P    W ++   P P     +PPP ++
Sbjct: 1243 PPSPPSSSVWNKREHHPKPFSLHQVPPPESL 1273


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 379 PWKRNWLRKP-RQPVPVDTASLPPPTTI 459
           P  +NWLR+P +QP+     +LP P ++
Sbjct: 9   PNSKNWLRQPDQQPIQDSICTLPGPGSL 36


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 426 HWHRLPRLSQPVSLPGHRGWMRHRQKPRRFYSC 328
           +W R   ++  VS P   G++ +R + +R+ SC
Sbjct: 150 YWERTSLMNVEVSAPEFPGFLHYRIQLKRYESC 182


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 355 PMAHPPSMPWKRNWLRKPRQPVPVDTASLPPPTT 456
           P++  P  P  R   R PR+P+P  + SL PP++
Sbjct: 44  PVSKKPLPPPTR---RLPRKPLPFRSTSLQPPSS 74


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 509 AYPSYELLINYRSTA*-FIVVGGGSDAVSTGTGCRGFLSQFRFQGIEG 369
           ++ S  +L  + ST    +VVGGGS  +S         S++RF   +G
Sbjct: 14  SFQSASMLARFASTHHKVLVVGGGSAGISVAHQIYNKFSKYRFANDQG 61


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +3

Query: 93  Q*VRYQSIYLNKAVNSLRFYLS*KNVILITSTKQRHLYKNHLREINYENYQYCCAAMALS 272
           Q + + S+  +K+V  L  Y    N  L    +   LY     E       YCCA  + S
Sbjct: 559 QDIEFGSLDADKSVTVLFSYDGKLNGALDAHFQTAVLYTTPSGERRVRVVNYCCAVTSKS 618

Query: 273 TLSFGVFAAEPVTASQAQ 326
             +  +   EP+ A  A+
Sbjct: 619 YDTISLAIVEPIVAVLAK 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,250
Number of Sequences: 5004
Number of extensions: 62462
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)