Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0710.Seq
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0962 + 21280172-21280255,21281363-21281902,21282052-21282147 31 1.0
01_03_0235 + 14059200-14059499 29 3.1
01_06_1046 + 34087867-34089402 29 4.1
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 29 4.1
07_01_1198 + 11376510-11376644,11377471-11377620,11378254-11378397 29 5.4
01_06_1048 + 34108360-34109895 29 5.4
11_06_0610 - 25449085-25453284 28 7.1
03_03_0028 + 13893813-13893959,13894961-13895264,13896557-138967... 28 7.1
07_03_0145 - 14376610-14377992 28 9.4
04_01_0365 - 4796780-4796971,4797246-4797327,4797417-4797527,479... 28 9.4
01_06_1043 + 34078015-34079541 28 9.4
>04_03_0962 + 21280172-21280255,21281363-21281902,21282052-21282147
Length = 239
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 98 G*ISINLFEQGGQFSSILSLVKKRDTHHIDETTSLIQKSPARD 226
G I+++L QGGQ + + V + HHID T+ + S D
Sbjct: 158 GFITLSLPHQGGQKNLVAGAVSVLERHHIDVVTATVSASEQGD 200
>01_03_0235 + 14059200-14059499
Length = 99
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 751 VAGFLSAVSQLKKSPSSGGRANKGNIGSMRVRAYASVGK 635
+A LSAV++L P A K +G + V + ASVGK
Sbjct: 13 IASLLSAVARLHHPPMFAATAGKECLGFVAVGSSASVGK 51
>01_06_1046 + 34087867-34089402
Length = 511
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 575 PNRWTDQAFTLRPAQVF--PCLFADRRICSNPH*SYVTL 685
P RW D+A RP F P A RIC +Y+ +
Sbjct: 428 PERWLDEAGAFRPESTFKYPVFNAGPRICIGKEMAYIQM 466
>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
Frame = +1
Query: 355 PMAHPPSMP-WKRNWLRKPRQPVPVDTASLPPPTTIN*AVLR*F--ISNS*DG*AFTRIR 525
P PP +K +WL P P PV+T + P + AV +S T +
Sbjct: 842 PNTPPPGFENFKSSWLPLPTTPPPVETTDVLPDVVVTKAVEAPIEEVSRPLPALEVTNME 901
Query: 526 QQMPDATLPRLIRPTK-SEPLDGSGVYATSSTSISLSVCRQTHML*P 663
+ LP + PT+ +E L + S + C Q M P
Sbjct: 902 SDTVLSILPTTVLPTEGTEGLLQQPLLRPPSPVVQSEPCLQNEMAPP 948
>07_01_1198 + 11376510-11376644,11377471-11377620,11378254-11378397
Length = 142
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 352 LPMAHPPSMPWKRNWLRKPRQ 414
+P++ P S W+R W RKP++
Sbjct: 28 VPLSSPVSTHWERRWERKPKK 48
>01_06_1048 + 34108360-34109895
Length = 511
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 575 PNRWTDQAFTLRPAQVF--PCLFADRRICSNPH*SYVTL 685
P RW D+A RP F P A R+C +Y+ +
Sbjct: 428 PERWLDEAGAFRPESTFKYPVFHAGPRMCLGKEMAYIQM 466
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 361 AHPPSMPWKRNWLRKPRQPVPVDTASLPPPTTIN 462
++PPS P + + P+ P SLPPP T++
Sbjct: 1094 SYPPSTPEESSPPSVPKASSPPTEKSLPPPATVS 1127
>03_03_0028 +
13893813-13893959,13894961-13895264,13896557-13896761,
13897428-13897646,13897734-13897869,13899130-13899387,
13899402-13899686
Length = 517
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 503 PSYELLINYRSTA*FIVVGGGSDAVSTGTGCRGFLS 396
P+ +LL+N ST +V GG D ++G+G +G ++
Sbjct: 473 PAAQLLVNLTSTM-EVVYLGGKDGYTSGSGLKGVIT 507
>07_03_0145 - 14376610-14377992
Length = 460
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 346 WFLPMAHPPSMPWKRNWLRKPR 411
+++P H P MP+ + W PR
Sbjct: 171 YYMPWMHQPPMPYYQEWKESPR 192
>04_01_0365 -
4796780-4796971,4797246-4797327,4797417-4797527,
4797608-4797859,4797945-4800115
Length = 935
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 364 HPPSMPWKRNWLRKPRQPVPVDTASLPPPTTI 459
HPPS P R+ PRQP P + S PP +
Sbjct: 494 HPPSPPPLRS---PPRQPTPPPSPSQQPPLPV 522
>01_06_1043 + 34078015-34079541
Length = 508
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 575 PNRWTDQAFTLRPAQVF--PCLFADRRICSNPH*SYVTL 685
P RW D+A RP F P A R+C +Y+ +
Sbjct: 426 PERWLDEAGAFRPESPFKYPVFHAGPRMCLGKEMAYIQM 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,026,668
Number of Sequences: 37544
Number of extensions: 469277
Number of successful extensions: 1511
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -