Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0710.Seq
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52188| Best HMM Match : MFS_1 (HMM E-Value=2.5e-16)                 31   1.0  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25)                   29   5.4  
SB_50397| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_52188| Best HMM Match : MFS_1 (HMM E-Value=2.5e-16)
          Length = 507

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 455 VVGGGSDAVSTGTGCRGFLSQFRFQGIEGGCAIG 354
           +VG  + A + G G   F+S F   G   GCA+G
Sbjct: 374 LVGATTSACTLGRGFAWFMSYFVINGFSNGCAVG 407


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 333  SCSVPGMPLPVPPRTRQMTELKEP*QHNSID 241
            S S PG P+P+P R R + + + P Q  +ID
Sbjct: 1347 SDSAPGSPVPLPSRKRTLEDTEIPSQERNID 1377


>SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 195 RHLYKNHLREINYENYQYCCAAMALSTLSFGVFAAEPVTASQAQNM 332
           + ++ ++  + N+   Q+ C + A STL   +  AE +TA  A N+
Sbjct: 277 KDIFPDNRNKFNFGTTQFLCFSRAKSTLKAVLSEAEIITAHSAANL 322


>SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25)
          Length = 418

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 311 RYRFRREHAXXXXXXXXXSTTVLIVFIINLSQVIFV--*VTLFRRCDEYHVFLRE 153
           RYR R+ +            +V I+FIIN+  VIF+   +T  +  DE   F+R+
Sbjct: 333 RYRHRQHYHHFHIVIIIVVVSVNIIFIINIVTVIFIVNVITTEKEFDEGIPFIRK 387


>SB_50397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 355 PMAHPPSMPWKRNWLRKPRQPVPVDTASLPPP 450
           P  H   +PW  +W+ +   P P      PPP
Sbjct: 35  PRKHEVRIPWPPSWITRSFSPSPYAAHFSPPP 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,025,487
Number of Sequences: 59808
Number of extensions: 512719
Number of successful extensions: 1655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)