Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0710.Seq
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    28   8.4  

>Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical
           protein C11G6.3 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 523 RQQMPDATLPRLIRPTKSEPLDGSGVYATSSTSISLSVCRQTHML*PSLILCYPCLPVRH 702
           R++  +A+ P +IRP  S+  D S    +S       VC   + +  ++I C  C    H
Sbjct: 275 RRKKEEASTPVIIRPLLSQEDDDSNGSESSEEIWICPVCSVAYTVGANMIGCDQCQDWFH 334

Query: 703 W 705
           W
Sbjct: 335 W 335


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 412 QPVPVDTASLPPPTTIN*AVLR*FISNS*DG*AFTRIRQQMPDATLPRLIRPTKSE 579
           Q  P   A+LPP   +  A ++ F+  +    A + +R Q+P A  PR+I P + +
Sbjct: 135 QTTPATFATLPPAPAVTRAPIQPFVPQTVATIAPSFVRPQVPTAP-PRVIAPQQPQ 189


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 355 PMAHPPSMPWKRNWLRKPRQPVPVDTASLPPPTTI 459
           P A  P    +R+  + P +P P   +S+PPP  I
Sbjct: 513 PPAPGPHKEQRRSTSKDPPRPAPPPVSSIPPPPPI 547


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,351,111
Number of Sequences: 27780
Number of extensions: 374907
Number of successful extensions: 971
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)