Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0710.Seq
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   7.2  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/56 (23%), Positives = 22/56 (39%)
 Frame = -2

Query: 423 WHRLPRLSQPVSLPGHRGWMRHRQKPRRFYSCSVPGMPLPVPPRTRQMTELKEP*Q 256
           WH    L     +P  +GW   R++ +    C +  +   +PP       L+ P Q
Sbjct: 139 WHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKALRLPLQ 194


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/56 (23%), Positives = 22/56 (39%)
 Frame = -2

Query: 423 WHRLPRLSQPVSLPGHRGWMRHRQKPRRFYSCSVPGMPLPVPPRTRQMTELKEP*Q 256
           WH    L     +P  +GW   R++ +    C +  +   +PP       L+ P Q
Sbjct: 196 WHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKALRLPLQ 251


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/43 (23%), Positives = 18/43 (41%)
 Frame = -2

Query: 423 WHRLPRLSQPVSLPGHRGWMRHRQKPRRFYSCSVPGMPLPVPP 295
           WH    L     +P  +GW   R++ +    C +  +   +PP
Sbjct: 123 WHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPP 165


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 553 RLIRPTKSEPLDGSGVYATSSTSIS 627
           +++ P KSEP+D   ++  S   +S
Sbjct: 251 KMLTPIKSEPIDAYEMHQISKKKLS 275


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 174 LITSTKQRHLYKNHLREINYENY 242
           +I+S    + Y N+  + NY NY
Sbjct: 314 IISSLSNNYNYNNNNYKYNYNNY 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,711
Number of Sequences: 438
Number of extensions: 5123
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)