Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0710.Seq
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07195.1 68416.m00858 proline-rich family protein                   31   0.64 
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui...    28   7.8  

>At3g07195.1 68416.m00858 proline-rich family protein
          Length = 225

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 358 MAHPPSMPWKRNWLRKPRQPVPV--DTASLPPPTTIN 462
           +A PP  P +R  ++KP  P PV  DT   PPPT  N
Sbjct: 49  LAPPPPQPARR--IQKPEAPKPVKQDTPRAPPPTEKN 83


>At3g53090.1 68416.m05851 HECT-domain-containing protein /
           ubiquitin-transferase family protein / IQ
           calmodulin-binding motif-containing protein contains
           Pfam profiles PF00632: HECT-domain
           (ubiquitin-transferase), PF00612: IQ calmodulin-binding
           motif
          Length = 1142

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 124 TRRSILFDFI-SRKKT*YSSHRRNNVTYTKITCERLIMKTINTVVLLWLFQL 276
           T + I+  FI S K   YS+ RR   T TK T ERL++ T    + L  F +
Sbjct: 210 TAKKIIIQFIGSCKSGYYSAVRRYIKTLTKHTDERLVITTSAVTLALRPFHV 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,351,936
Number of Sequences: 28952
Number of extensions: 348582
Number of successful extensions: 880
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)