Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0709.Seq
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.3  
07_03_0846 - 21983581-21986055                                         29   3.1  
05_05_0272 - 23738514-23738817,23739382-23740748                       29   4.1  
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938...    29   4.1  
09_04_0407 + 17345382-17345579,17345711-17346235                       29   5.4  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 224 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 90
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 82  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 231
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 699 GHLRYS-LTDVPPQSNSPPGSVPNRIT 776
           G  RY+ +TDVPP  N P   VPN IT
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVIT 424


>02_04_0276 +
           21491150-21492761,21492891-21492947,21493817-21493870,
           21493994-21494022
          Length = 583

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -1

Query: 311 RTFGSCTRPSGRWCEATIRGLCLNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 144
           R  GS  RP    C A I+ L  +   AEA   LA  G D++      +G  G+ Q D  
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145

Query: 143 SRV 135
            R+
Sbjct: 146 RRL 148


>09_04_0407 + 17345382-17345579,17345711-17346235
          Length = 240

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 276 VVRSYHPRIMPERL*GRSQPSRIRQGYAHCGAP 178
           + + YHP++       +S  S IR+ YAHC  P
Sbjct: 4   LAQEYHPKLPATNHYCKSLSSLIRETYAHCHVP 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,184,364
Number of Sequences: 37544
Number of extensions: 481152
Number of successful extensions: 1314
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)