Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0709.Seq
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18000.1 68418.m02111 transcriptional factor B3 family protei...    29   3.4  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.4  
At1g14740.1 68414.m01762 expressed protein                             29   4.5  
At2g02500.1 68415.m00189 expressed protein contains Pfam profile...    28   7.9  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   7.9  
At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    28   7.9  

>At5g18000.1 68418.m02111 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 307

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 460 RNDRKSRHRRIKKQRRLNAWLPQASYPC 543
           R +RKS ++ +KK+  + +W  ++S+PC
Sbjct: 135 REERKSIYKDVKKEEEIESW-SESSHPC 161


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 689 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 576
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -1

Query: 341 YCSVREEPQFRTFGSCTRP-SGRWCEATIRGLCLNASKAEASLAESGKDMLTVEPRESGG 165
           + +VR       F S + P SG   E T+  LC N+ K   SL + GK+++T     S  
Sbjct: 46  FLNVRSNNLDGGFSSKSSPRSGN--ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYD 103

Query: 164 SK--QCDFTSRVSHSKRETRRRS 102
            K  + DF +    +   ++R++
Sbjct: 104 DKWVERDFFNLREMNPNSSKRKA 126


>At2g02500.1 68415.m00189 expressed protein contains Pfam profile:
           PF01128 uncharacterized protein family UPF0007;
           identical to GP:12697583 2-C-methyl-D-erythritol
           4-phosphate cytidyltransferase {Arabidopsis thaliana};
           identical to cDNA
           4-Diphosphocytidyl-2C-methyl-D-erythritol synthase
           (ISPD)  GI:7385140
          Length = 302

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 571 FSKRCQKSYHRDNWLVAAKRSSDVAF 494
           FSKR  +SY RD  L++ K SS   F
Sbjct: 42  FSKRVNRSYKRDALLLSIKCSSSTGF 67


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 281 GRWCEATIRGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 150
           G W +  +       +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 516 SVQATLLFDPSMSALPIIAKQNSPSVGLFT 427
           SV   LL  P +  L  I+ QN P+VGLFT
Sbjct: 7   SVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,167,637
Number of Sequences: 28952
Number of extensions: 360022
Number of successful extensions: 983
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)