Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0707.Seq
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46267-2|CAC42301.1|  600|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...    29   4.0  
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.        29   4.0  
AF228712-1|AAF34798.1|   91|Caenorhabditis elegans molybdenum co...    29   4.0  

>Z46267-2|CAC42301.1|  600|Caenorhabditis elegans Hypothetical
           protein F49E2.1b protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 157 RDRVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPS 276
           RDR+ C  S EQ S + ++ +  ++A++ +   G   EP+
Sbjct: 343 RDRIRCGDSDEQLSEVIQKAVNNKKARHAVFRNGRSEEPA 382


>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = -1

Query: 549 RKINK*GFRAHFPESAT*RAL*RRIKRGGCGGYAQRDRYTCQRPSAR---SFRFLPFLSR 379
           RK++   FR+H  E+A  R        GG GG   RDR   + P A    S ++ P  SR
Sbjct: 175 RKLDDTKFRSHEGETAYIRVREDNSSGGGSGG-GGRDRSRSRSPRAERRASPKYSPRRSR 233

Query: 378 HVRRLSPSSSKSGAPFRVPI*CFTAPRPQ 292
             R  S S S+S +  R P     +P PQ
Sbjct: 234 S-RSRSRSRSRSRSASRSP---SRSPSPQ 258


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = -1

Query: 549 RKINK*GFRAHFPESAT*RAL*RRIKRGGCGGYAQRDRYTCQRPSAR---SFRFLPFLSR 379
           RK++   FR+H  E+A  R        GG GG   RDR   + P A    S ++ P  SR
Sbjct: 175 RKLDDTKFRSHEGETAYIRVREDNSSGGGSGG-GGRDRSRSRSPRAERRASPKYSPRRSR 233

Query: 378 HVRRLSPSSSKSGAPFRVPI*CFTAPRPQ 292
             R  S S S+S +  R P     +P PQ
Sbjct: 234 S-RSRSRSRSRSRSASRSP---SRSPSPQ 258


>AF228712-1|AAF34798.1|   91|Caenorhabditis elegans molybdenum
           cofactor synthesis-step1 protein MOCS1A-B protein.
          Length = 91

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 157 RDRVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPS 276
           RDR+ C  S EQ S + ++ +  ++A++ +   G   EP+
Sbjct: 21  RDRIRCGDSDEQLSEVIQKAVNNKKARHAVFRNGRSEEPA 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,568,375
Number of Sequences: 27780
Number of extensions: 299735
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)