Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0705.Seq
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   2.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   6.1  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    21   8.1  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 610 YQINLGKVSLNTIKEKHRH 666
           Y +NLG +  N I E HR+
Sbjct: 285 YTVNLGSLGYNEICEFHRN 303


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 500 FQLTLLPYYGRKVHQWSNS 556
           F + L P+Y +   +W NS
Sbjct: 169 FIMDLFPFYRQNQQRWQNS 187


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 308 LKITSEMKDTHGVLMTK 358
           LK+T+ + D HG L  K
Sbjct: 77  LKLTNNISDKHGFLKEK 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,191
Number of Sequences: 336
Number of extensions: 4840
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)