Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0705.Seq
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    31   0.18 
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    26   5.1  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   5.1  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    26   6.7  

>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 15/82 (18%)
 Frame = +2

Query: 50  KRRMIATAHMVRLLIATVFWWGWTTLF---NVIENNY----GRCNSKSYDNKI------- 187
           KR  I    + R ++AT++W   T  F    +I+  +    G C +   D+ +       
Sbjct: 84  KRNKIDFKFISRYIVATLWWMFVTQWFIGPGLIDRTFALSGGSCKNFDGDSSVFIPLTAS 143

Query: 188 TCLK-NGSFWNGFDISGHCFIL 250
           TC   NGS+  G D+SGH F+L
Sbjct: 144 TCKGLNGSWSGGHDLSGHVFLL 165


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 396 FTTYIFKWVCTDCFVINTP*VS-FISDVIFNALPSIYCS 283
           F TY+ K    +  +++   V  F+SDV+ N +P ++ S
Sbjct: 264 FATYLLKTEIAETIILHPKDVPWFVSDVLVNDIPHLFNS 302


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 278 SSIKTKLEILK*NNDLICQTHSKMIHFSDM*FCYHMILNYTVHNYFQ*H*KV*SIPTKT 102
           S IKT  EIL+    ++    SK + +    FC + +++Y++H++      +  IP KT
Sbjct: 281 SLIKTFSEILQTGISVLIFLLSKNLDYD---FCLNHLISYSMHHFIPSFISLLKIPLKT 336


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +3

Query: 591 YTFPYILPNKPGQGVFKYNKGKAQAPTPVYLKR-MSSVNGKHFY 719
           YTF    PNKP + +      +  A T  YL R M S  G   Y
Sbjct: 258 YTFELTFPNKPAETISTLQAEEIVALTAKYLSRQMRSEVGNVVY 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,376,322
Number of Sequences: 5004
Number of extensions: 76092
Number of successful extensions: 210
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)