Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0705.Seq
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0121 - 920988-921296,921556-921620,921874-921923,922009-92... 28 7.1
11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734... 28 9.3
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308... 28 9.3
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 28 9.3
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873... 28 9.3
05_02_0097 - 6573093-6573254,6573297-6573398,6573922-6574005,657... 28 9.3
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 28 9.3
03_06_0220 + 32452831-32452944,32453618-32453911,32454416-324545... 28 9.3
>12_01_0121 -
920988-921296,921556-921620,921874-921923,922009-922106,
923832-923867,925351-925731,925839-926324,926471-926647
Length = 533
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 591 YTFPYILPNKPGQGVFKYNKGKAQAPTPVYLKRMSSVNGKHFYGYA 728
+ P IL N + + + Q +P+ +R + N +H YG+A
Sbjct: 101 FLLPDILTNMANENALRCARVALQGTSPLLRRRRADPNTRHRYGFA 146
>11_06_0685 -
26272928-26273110,26273186-26273257,26273339-26273425,
26273566-26273655,26273741-26273785,26273872-26274054,
26274333-26274392,26274521-26274703,26274779-26274907,
26275083-26275380,26275454-26275608,26275791-26275929,
26276015-26276096,26276167-26276285,26276367-26276494,
26276640-26276813,26276882-26277028
Length = 757
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 301 ERIKDYIRDERYSRSIDDKAISTNPLKNISSEELEILKRSYEK 429
E + DY DE Y++ + ++ TNP K + +I +S K
Sbjct: 481 ESLDDYF-DEEYNKKVTQESTKTNPSKRRVTRRFKIANKSMLK 522
>11_06_0459 +
23830204-23830350,23830419-23830592,23830738-23830865,
23830947-23831065,23831136-23831217,23831303-23831441,
23831624-23831778,23831852-23832149,23832325-23832453,
23832529-23832711,23832840-23832899,23832973-23833101,
23833177-23833359,23833446-23833490,23833576-23833665,
23833806-23833892,23833974-23834045,23834120-23834302
Length = 800
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 301 ERIKDYIRDERYSRSIDDKAISTNPLKNISSEELEILKRSYEK 429
E + DY DE Y++ + ++ TNP K + +I +S K
Sbjct: 481 ESLDDYF-DEEYNKKVTQESTKTNPSKRRVTRRFKIANKSMLK 522
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 301 ERIKDYIRDERYSRSIDDKAISTNPLKNISSEELEILKRSYEK 429
E + DY DE Y++ + ++ TNP K + +I +S K
Sbjct: 481 ESLDDYF-DEEYNKKVTQESTKTNPSKRRVTRRFKIANKSMLK 522
>06_03_0084 -
16386962-16387033,16387124-16387175,16387252-16387313,
16387509-16387543,16387637-16387679,16388610-16388692,
16388829-16388917,16390415-16390681,16391370-16391446,
16391546-16391677,16391802-16391870,16392464-16392529,
16392603-16392773,16392848-16392916,16393005-16393086,
16393175-16393219,16393535-16393659,16394271-16394525,
16396561-16396722
Length = 651
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +1
Query: 313 DYIRDERYSRSIDD---KAISTNPLKNISSEELEILKRSYEK 429
DY RD+R+S+S D + +P K SSE+L LK S+ K
Sbjct: 237 DYERDKRFSKSFKDLVATCLVKDPRKRPSSEKL--LKHSFFK 276
>05_02_0097 -
6573093-6573254,6573297-6573398,6573922-6574005,
6574190-6574285,6574373-6574423,6574537-6574677,
6575025-6575081,6575163-6575237,6575323-6575595,
6575689-6575748,6576184-6576285,6576377-6576451
Length = 425
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -2
Query: 590 PDPVRYKPCQYGYYSTDELFYHNMVIELV-ET---SITSHSNCNAAMPI 456
P+ + K C + S DELF N+V+E V ET + +SN N MP+
Sbjct: 114 PNVISLKHCFFSTTSRDELFL-NLVMEYVPETLYRVLKHYSNANHRMPL 161
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 301 ERIKDYIRDERYSRSIDDKAISTNPLKNISSEELEILKRSYEK 429
E + DY DE Y++ + ++ TNP K + +I +S K
Sbjct: 660 ESLDDYF-DEEYNKKVTQESTKTNPSKRRVTRRFKIANKSMLK 701
>03_06_0220 +
32452831-32452944,32453618-32453911,32454416-32454503,
32454596-32454717,32454985-32455142,32455201-32455273,
32455552-32455640,32455753-32455858,32455967-32456179,
32456726-32456920,32457051-32457128,32457209-32457523
Length = 614
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 560 YGYYSTDELFYHNMVIELVETSITSHSN 477
YG Y T + H M + ++ SI SH+N
Sbjct: 260 YGSYPTKGKYNHEMALRILLASIESHAN 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,518,758
Number of Sequences: 37544
Number of extensions: 437407
Number of successful extensions: 973
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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