Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0705.Seq
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       33   0.19 
SB_48891| Best HMM Match : PQQ (HMM E-Value=0.73)                      31   1.4  
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)                 30   2.4  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)                  29   3.1  
SB_19241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_39353| Best HMM Match : 7tm_3 (HMM E-Value=3.2e-09)                 29   4.1  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.1  
SB_35414| Best HMM Match : NinE (HMM E-Value=8.4)                      29   5.5  
SB_58331| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_6187| Best HMM Match : Ubie_methyltran (HMM E-Value=0.47)           28   7.2  
SB_5699| Best HMM Match : DUF689 (HMM E-Value=3.8e-10)                 28   7.2  
SB_46992| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   9.5  
SB_54434| Best HMM Match : Glyco_hydro_65C (HMM E-Value=9.5)           28   9.5  
SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.5  

>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 137 IENNYGRCNSKSYDNKITCLKNGSFWNGFDISGHCFILIFQ 259
           I+ +   C    YDN +    NG + +G D S H FI+IFQ
Sbjct: 160 IDGDNDSCRGSDYDNDVNESDNGDYRSG-DCSLHSFIIIFQ 199


>SB_48891| Best HMM Match : PQQ (HMM E-Value=0.73)
          Length = 277

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 645 NKGKAQAPTPVYLKRM-SSVNGKHFYGYAYQKPK 743
           N+G   AP+P+  K   +S +  H YGY Y +PK
Sbjct: 215 NRGGQYAPSPLTNKEQDNSEDSHHPYGYGYPRPK 248


>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
          Length = 892

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 20  LLTSYTTCCGKRRMIATAHMVRLLIATVFWWGWTTLFNVIENNYGR-CNSKSYDNKITCL 196
           ++T   T C  RR +   H V  L     W G+      I N + + CNS+S +   +C 
Sbjct: 170 IVTFSITLC-PRRSVRPPHRV-YLFDKANWDGFRQHVTSISNVFMKSCNSRSVEENWSCF 227

Query: 197 KNGSFWNGFDI 229
           KN S  +G D+
Sbjct: 228 KN-SIHSGIDL 237


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 20  LLTSYTTCCGKRRMIATAHMVRLLIATVFWWGWTTLFNVIENNYGR-CNSKSYDNKITCL 196
           ++T   T C  RR +   H V  L     W G+      I N + + CNS+S +   +C 
Sbjct: 422 IVTFSITLC-PRRSVRPPHRV-YLFDKANWDGFRQHVTSISNVFMKSCNSRSVEENWSCF 479

Query: 197 KNGSFWNGFDI 229
           KN S  +G D+
Sbjct: 480 KN-SIQSGIDL 489


>SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 20  LLTSYTTCCGKRRMIATAHMVRLLIATVFWWGWTTLFNVIENNYGR-CNSKSYDNKITCL 196
           ++T   T C  RR +   H V  L     W G+      I N + + CNS+S +   +C 
Sbjct: 370 IVTFSITLC-PRRSVRPPHRV-YLFDKANWDGFRQHVTSISNVFMKSCNSRSVEENWSCF 427

Query: 197 KNGSFWNGFDI 229
           KN S  +G D+
Sbjct: 428 KN-SIQSGIDL 437


>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
          Length = 501

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 631 PCPGLFGKIYGKVYQT 584
           PCPG +GK YGKV +T
Sbjct: 360 PCPGWYGKGYGKVKRT 375


>SB_19241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 652 PLLYLKTPCPGLFGKIYGKVYQTLYVTNHV 563
           P+ Y   PC G+    YGK+YQ    T HV
Sbjct: 31  PITYFSWPCLGVEFYGYGKLYQPKGTTEHV 60


>SB_39353| Best HMM Match : 7tm_3 (HMM E-Value=3.2e-09)
          Length = 836

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 561 LTWFVTYRVW-YTFPYILPNKPGQGVFKYNKGKAQAPTPVYLKRMSSVNGK 710
           +TW +  R W  T P  LPN   QG+F      + +    YL+ + + N K
Sbjct: 222 MTWVMGQRSWPNTAPIALPNMAAQGMFVIETHTSLSGFEDYLRSLPTGNTK 272


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 81  LDY*LPLCFGGDGLHFSMLLKIIMDGVIQNHMITKLHV*KMDHFGMGLTY 230
           +D+ LP CFGG+ L   +  K    G+I   MI  L++ K   F   LTY
Sbjct: 317 IDFSLPGCFGGERLDVYITGKWFNYGIIFIVMILDLNMWKNQIFYEPLTY 366


>SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1213

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 349 DDKAISTNPLKNISSEELEILKRSYEKFTPYVRGLFI 459
           D   IS N   +  ++EL+   RS EK+TP+VR ++I
Sbjct: 291 DRAEISANRFAD--NQELKYSLRSVEKYTPWVRNIYI 325


>SB_35414| Best HMM Match : NinE (HMM E-Value=8.4)
          Length = 172

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 571 NHVNMAITPLMNFSTIIW 518
           NH N  I P+MN++ +IW
Sbjct: 45  NHFNAIIKPVMNYANVIW 62


>SB_58331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 519 HIMVEKFISGVIAILTW-FVTYRVWYTFPYILPNKPGQGVFKYNKGKAQAPTPVYLKRMS 695
           H++ +  +S  ++I TW FV +   YT   +     G  V +YN GK +  T   ++  +
Sbjct: 136 HVLTKILVSEALSIFTWYFVGFSYDYTSGCLKLYLNGVLVREYNIGKVELATDREIRLGA 195

Query: 696 SVNGKHFY 719
             +   +Y
Sbjct: 196 VTHDSRYY 203


>SB_6187| Best HMM Match : Ubie_methyltran (HMM E-Value=0.47)
          Length = 431

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +2

Query: 419 LMRNLHLT*EDFLLALLHYNYYGMLCLFQLTLLPYYGRKVHQWSNSHIDM 568
           +  NLHL  E+F    L+ +YY  +     T + + G+++ + SN ++++
Sbjct: 111 MQTNLHLPKEEFDQFCLYQSYYAPVFRQISTRVDFGGKRIREESNDNLEI 160


>SB_5699| Best HMM Match : DUF689 (HMM E-Value=3.8e-10)
          Length = 333

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 29  SYTTCCGKRRMIATAHMVRLLIATVFWWGWTTLFNVIENNYGRCNSKSYDNKITCL 196
           S T+ CG   ++ATA +  L +    +WG       + +  G    K+ D   +CL
Sbjct: 179 SVTSSCGSVSIMATARIFHLRVGRGGFWGLN--IGTLSSGVGENRRKTLDEWASCL 232


>SB_46992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 579 YRVWYTFPYILPNKPGQGVFKYNKGKAQAPTPVYLKR 689
           +  +Y + Y+ P +  +GV+KYN    Q   P+ L R
Sbjct: 64  HATFYEYRYVSPERLSRGVYKYNNDYEQL-RPLLLSR 99


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
 Frame = +2

Query: 71  AHMVRLLIATVFWWGWTT---LFNVIENNYGRCN--SKSYDNKITCLKNGSFW--NGFDI 229
           A  V    A V  WG+     + N++ENN G+C   +  +D  +  + N   +  NGF +
Sbjct: 629 ATTVAKFAARVLGWGYQFTDHVLNLVENNIGKCKPLTNIFDGTVMYMCNDLLYPFNGFWL 688

Query: 230 S-GHC 241
           S G C
Sbjct: 689 SMGFC 693


>SB_54434| Best HMM Match : Glyco_hydro_65C (HMM E-Value=9.5)
          Length = 384

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 587 DPVRYKPCQYGYYSTDELFYHNMVIELVETSIT 489
           +P  Y P QY  YST++L ++N     ++  IT
Sbjct: 267 EPYSYMPEQYINYSTEQLKFNNYATRYLKPRIT 299


>SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 322 RDERYSRSIDDKAISTNPLKNISSEELEIL 411
           RD RYSR +   AI  NP+  ++ EE+ ++
Sbjct: 50  RDARYSREVTASAIKVNPV-GVAMEEVNLV 78


>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 50  KRRMIATAHMVRLLIATVFWWGWTTLFNVIENNYGR-CNSKSYDNKITCLKNGSFWNGFD 226
           +R    TAH  R ++         + F V+    GR CN +S  NK   L NGSF +   
Sbjct: 123 RRARSQTAHTTRRVVRDGKSKTAFSYFRVLHAPAGRPCNVRSCHNKPHALNNGSF-DPDP 181

Query: 227 ISGHCFILI 253
               CF+ I
Sbjct: 182 CGDRCFLSI 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,541,860
Number of Sequences: 59808
Number of extensions: 524933
Number of successful extensions: 1263
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)