Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0705.Seq
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61500.1 68414.m06929 S-locus protein kinase, putative simila...    28   5.9  
At1g61480.1 68414.m06927 S-locus protein kinase, putative simila...    28   5.9  
At1g61460.1 68414.m06925 S-locus protein kinase, putative contai...    28   5.9  
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '...    28   7.8  
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '...    28   7.8  

>At1g61500.1 68414.m06929 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 804

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 603 YILPNKPGQGVF-KYNKGKAQAPTPVYLKRMSSVNGK 710
           + L NK GQG F    KGK Q    + +KR+SS +G+
Sbjct: 491 FSLSNKLGQGGFGSVYKGKLQDGKEIAVKRLSSSSGQ 527


>At1g61480.1 68414.m06927 S-locus protein kinase, putative similar
           to receptor protein kinase (IRK1) GI:836953 from
           [Ipomoea trifida]; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 809

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 603 YILPNKPGQGVF-KYNKGKAQAPTPVYLKRMSSVNGK 710
           + L NK GQG F    KGK Q    + +KR+SS +G+
Sbjct: 496 FSLSNKLGQGGFGSVYKGKLQDGKEIAVKRLSSSSGQ 532


>At1g61460.1 68414.m06925 S-locus protein kinase, putative contains
           similarity to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 598

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 603 YILPNKPGQGVF-KYNKGKAQAPTPVYLKRMSSVNGK 710
           + L NK GQG F    KGK Q    + +KR+SS +G+
Sbjct: 303 FSLSNKLGQGGFGSVYKGKLQDGKEIAVKRLSSSSGQ 339


>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
           'Morpheus molecule') [Arabidopsis thaliana]
           gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 125 LFNVIENNYG-RCNSKSYDNKITCLKNGSFWNGFDISGHCFILIFQ 259
           L N++E+  G R   KSY++ I   K  S  N F+    C +L+ +
Sbjct: 593 LGNILEDFVGQRFGPKSYEHGIYSSKKNSAINNFNKESQCCVLLLE 638


>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
           'Morpheus molecule') [Arabidopsis thaliana]
           gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 125 LFNVIENNYG-RCNSKSYDNKITCLKNGSFWNGFDISGHCFILIFQ 259
           L N++E+  G R   KSY++ I   K  S  N F+    C +L+ +
Sbjct: 593 LGNILEDFVGQRFGPKSYEHGIYSSKKNSAINNFNKESQCCVLLLE 638


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,125,262
Number of Sequences: 28952
Number of extensions: 380414
Number of successful extensions: 767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)