Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0704.Seq
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)             127   8e-30
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   3e-21
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)                      38   0.011
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)                34   0.10 
SB_26368| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_9976| Best HMM Match : PIP5K (HMM E-Value=2)                        32   0.41 
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      32   0.41 
SB_14666| Best HMM Match : NHL (HMM E-Value=4.5)                       30   2.2  
SB_9845| Best HMM Match : NHL (HMM E-Value=3.3)                        30   2.2  
SB_53547| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)                   30   2.2  
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_54303| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_7343| Best HMM Match : EGF (HMM E-Value=0)                          29   2.9  
SB_59412| Best HMM Match : NHL (HMM E-Value=1.9)                       29   5.0  
SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)               29   5.0  
SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)                   29   5.0  
SB_52381| Best HMM Match : UPF0004 (HMM E-Value=8.5)                   28   8.8  
SB_37371| Best HMM Match : NHL (HMM E-Value=0.79)                      28   8.8  
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score =  127 bits (307), Expect = 8e-30
 Identities = 57/84 (67%), Positives = 70/84 (83%)
 Frame = +2

Query: 257  FEWHVRLHQIDPESDLATDLRELHIPNILLHLVFPENFPFAPPFMRVIEPRIDKGFVMEG 436
            FEW+V+LH ID +S L  D+ E     ILL++ FPENFPFAPPFMRV+ PRI+ GFV++G
Sbjct: 764  FEWNVKLHTIDGDSLLYRDMVETGSKFILLNITFPENFPFAPPFMRVLAPRIEGGFVLDG 823

Query: 437  GAICMELLTPRGWASAYTVEAVVM 508
            GAICMELLTP+GW+SAYTVEAVV+
Sbjct: 824  GAICMELLTPKGWSSAYTVEAVVL 847



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = +1

Query: 508 EFAASVVKGQGRVARAPTRPSCEXXXXXXXXXXXXXXKTHDKYGWVTPALSDG 666
           +F+A+VVKG+GR+ R   +   +              KTHDKYGWVTP  ++G
Sbjct: 848 QFSAAVVKGKGRIDRTCKKAFSKKEAESAYKRLV---KTHDKYGWVTPPKAEG 897


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 44/82 (53%), Positives = 62/82 (75%), Gaps = 4/82 (4%)
 Frame = +2

Query: 275 LHQIDPESDLATDLRELH----IPNILLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGA 442
           +H++DPES L  D+ ++     I +ILL++ F + FPF PPF+RV  P I  G+V+ GGA
Sbjct: 548 IHRVDPESVLHKDMVQIEKQEGIDHILLNMTFTDKFPFDPPFVRVCYPVIQAGYVLSGGA 607

Query: 443 ICMELLTPRGWASAYTVEAVVM 508
           ICMELLTP+GW+SAYT+EAV++
Sbjct: 608 ICMELLTPQGWSSAYTIEAVIV 629


>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 145

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
           + + FP  +PF PP +   + +I    + E G +C+ +++P  W  A   E V+ +
Sbjct: 44  IEICFPAEYPFKPPKI-TFKTKIYHPNIDEKGQVCLPIISPENWKPATKTEQVIQA 98


>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
          Length = 190

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +2

Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELL--TPRG-WASAYTVEAVV 505
           L +  PE +PF PP +R + P I    +   G IC++ L   P+G W  A  + +V+
Sbjct: 17  LDIQIPERYPFEPPKVRFVTP-IYHPNIDSSGRICLDTLKMPPKGMWKPALNISSVL 72


>SB_26368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 411 ILGSMTRINGGANGKFSGNTKCKRMFGMCSSRRSVA 304
           +L S+T IN GANG +SG       FG  S   S+A
Sbjct: 26  MLFSITNINSGANGNYSGQLNAILSFGRTSILTSIA 61


>SB_9976| Best HMM Match : PIP5K (HMM E-Value=2)
          Length = 673

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 411 ILGSMTRINGGANGKFSGNTKCKRMFGMCSSRRSVA 304
           +L S+T IN  ANG +SGN      FG  S   S+A
Sbjct: 71  MLFSITNINSDANGNYSGNLNAVLSFGRTSILTSIA 106


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 347  HLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTP 466
            H+ FP ++P++PP  R +  ++    + E G +C+ +L P
Sbjct: 1177 HMSFPHDYPYSPPTFRFL-TKMWHPNIYESGDVCISILHP 1215


>SB_14666| Best HMM Match : NHL (HMM E-Value=4.5)
          Length = 151

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = -2

Query: 411 ILGSMTRINGGANGKFSGNTKCKRMFGMCSSRRSVA------RSLSGSIWCSLTCHSKNC 250
           +L S+T IN  ANG +SG       FG  S   S+A        L G    +  CHS + 
Sbjct: 71  MLFSITNINSDANGNYSGQLNAILSFGRTSILTSIAVTRDDDHILVGDCKENAPCHSDSI 130

Query: 249 R 247
           R
Sbjct: 131 R 131


>SB_9845| Best HMM Match : NHL (HMM E-Value=3.3)
          Length = 633

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 411 ILGSMTRINGGANGKFSGNTKCKRMFGMCSSRRSVA 304
           +L S+T IN  ANG +SG+      FG+ S   S+A
Sbjct: 248 MLFSITNINPDANGNYSGHLNSILSFGLTSILTSIA 283


>SB_53547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1381

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 411 ILGSMTRINGGANGKFSGNTKCKRMFGMCSSRRSVA 304
           +L S+T IN  ANG +SG+      FG  S   S+A
Sbjct: 425 MLFSITNINSDANGNYSGHLNAILSFGRTSILTSIA 460


>SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)
          Length = 1055

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 411 ILGSMTRINGGANGKFSGNTKCKRMFGMCSSRRSVA 304
           +L S+T IN  ANG +SG+      FG  S   S+A
Sbjct: 726 MLFSITNINSDANGNYSGHLNAILSFGRTSILTSIA 761


>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2061

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 411  ILGSMTRINGGANGKFSGNTKCKRMFGMCSSRRSVA 304
            +L S+T IN  ANG +SGN      FG      S+A
Sbjct: 1003 MLFSITNINSDANGNYSGNLNAILSFGRTCILTSIA 1038


>SB_54303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 411 ILGSMTRINGGANGKFSGNTKCKRMFGMCSSRRSVA 304
           +L S+T IN  ANG +SG       FG  S   S+A
Sbjct: 93  MLFSITNINSDANGNYSGQLNAILSFGRTSILTSIA 128


>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1233

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 173 YEGTEGNQTAAGEPTRPCVYGGACQR 250
           Y GT   +    EP  PC+ GG C+R
Sbjct: 328 YLGTNCTERNLCEPVNPCINGGTCKR 353



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 167 TSYEGTEGNQTAAGEPTRPCVYGGACQR 250
           + Y G    +    EP  PC  GG CQR
Sbjct: 283 SGYTGRNCTERDLCEPENPCANGGTCQR 310



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 173 YEGTEGNQTAAGEPTRPCVYGGACQR 250
           Y GT   +    EP  PC  GG C+R
Sbjct: 371 YLGTNCTERNLCEPVNPCANGGTCKR 396


>SB_59412| Best HMM Match : NHL (HMM E-Value=1.9)
          Length = 194

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 411 ILGSMTRINGGANGKFSGNTKCKRMFGMCSSRRSVA 304
           +L S+T IN  ANG +SG       FG  S   S+A
Sbjct: 18  MLFSITNINSDANGNYSGYLNAILSFGRTSILTSIA 53


>SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)
          Length = 361

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +1

Query: 304 CHGPTRTAHSEH-PLTLSVPREFSICTAVYACHRTEN 411
           CH P  T H  H PLT   P   S  TAV  CH   N
Sbjct: 174 CHSPPNTVHPCHSPLTAVHPCH-SPLTAVRPCHSPPN 209


>SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)
          Length = 856

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 231 TVELVNDNFSSGT*GCTRSIQRVILPRTYENCTFRTSSYT*CSQRIFHLHRRLCVSS 401
           T+ LV+    +     T  I+ + +P  Y+ CT +TS Y   S  +   HR   V S
Sbjct: 608 TINLVHQRHRNTRVLSTLYIKDIEIPGYYQPCTSKTSKYPGTSHLVHQRHRNTRVLS 664



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 231 TVELVNDNFSSGT*GCTRSIQRVILPRTYENCTFRTSSYT*CSQRIFHLHRRLCVSS 401
           T+ LV+    +     T  I+ + +P  Y+ CT +TS Y   S  +   HR   V S
Sbjct: 747 TINLVHQRHRNTRVLATWYIKDIGIPGYYQPCTSKTSEYPGTSHLVHRRHRNTRVLS 803


>SB_52381| Best HMM Match : UPF0004 (HMM E-Value=8.5)
          Length = 508

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 486 YADAQPRGVSSSMHIAPPSITNPLSILGSMTRINGGANG 370
           Y + Q  G  S +H+ PPS+  P  ++ S   +NG   G
Sbjct: 368 YENTQDHGSRSDIHL-PPSLYEPALLISSHMDLNGNEFG 405


>SB_37371| Best HMM Match : NHL (HMM E-Value=0.79)
          Length = 312

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 411 ILGSMTRINGGANGKFSGNTKCKRMFGMCSSRRSVA 304
           +L S+  IN  ANG +SG+      FG  S   S+A
Sbjct: 135 MLFSIANINSDANGNYSGHLNAILSFGRTSILTSIA 170


>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 486 YADAQPRGVSSSMHIAPPSITNPLSILGSMTRINGGANG 370
           Y + Q  G  S +H+ PPS+  P  ++ S   +NG   G
Sbjct: 432 YENTQDHGSRSDIHL-PPSLYEPALLISSHMDLNGNEFG 469


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,205,058
Number of Sequences: 59808
Number of extensions: 494154
Number of successful extensions: 1427
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)