Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0704.Seq
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical pr... 95 3e-20
AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin con... 95 3e-20
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 37 0.013
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 36 0.029
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 36 0.029
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 35 0.068
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 34 0.089
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 33 0.21
Z46343-3|CAA86459.1| 316|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 30 1.9
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 29 3.4
U23522-1|AAC46819.3| 962|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 29 3.4
AL132952-10|CAB63384.1| 591|Caenorhabditis elegans Hypothetical... 28 5.9
AF125445-1|AAD12803.2| 550|Caenorhabditis elegans Hypothetical ... 28 5.9
AF003386-4|AAO38631.1| 452|Caenorhabditis elegans Hypothetical ... 28 5.9
AF003386-3|AAO38630.1| 499|Caenorhabditis elegans Hypothetical ... 28 5.9
Z22180-10|CAO82052.1| 360|Caenorhabditis elegans Hypothetical p... 28 7.8
Z22180-9|CAO82051.1| 304|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z22180-2|CAD54146.1| 392|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z22180-1|CAA80176.2| 371|Caenorhabditis elegans Hypothetical pr... 28 7.8
>Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical
protein F25H2.8 protein.
Length = 387
Score = 95.5 bits (227), Expect = 3e-20
Identities = 39/92 (42%), Positives = 65/92 (70%), Gaps = 4/92 (4%)
Frame = +2
Query: 245 QRQFFEWHVRLHQIDPESDLATDLREL----HIPNILLHLVFPENFPFAPPFMRVIEPRI 412
+ ++W ++LH++D +S L D+++L + ++L F E FP PPF+RV+ P I
Sbjct: 244 EENLYQWWIKLHKVDEDSPLFEDMKKLKKDHNQDHLLFSFTFNEKFPCDPPFVRVVAPHI 303
Query: 413 DKGFVMEGGAICMELLTPRGWASAYTVEAVVM 508
++GFV+ GGAICMELLT +GW+SAY++E+ ++
Sbjct: 304 NQGFVLGGGAICMELLTKQGWSSAYSIESCIL 335
>AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin
conjugating enzyme UBC-25 protein.
Length = 387
Score = 95.5 bits (227), Expect = 3e-20
Identities = 39/92 (42%), Positives = 65/92 (70%), Gaps = 4/92 (4%)
Frame = +2
Query: 245 QRQFFEWHVRLHQIDPESDLATDLREL----HIPNILLHLVFPENFPFAPPFMRVIEPRI 412
+ ++W ++LH++D +S L D+++L + ++L F E FP PPF+RV+ P I
Sbjct: 244 EENLYQWWIKLHKVDEDSPLFEDMKKLKKDHNQDHLLFSFTFNEKFPCDPPFVRVVAPHI 303
Query: 413 DKGFVMEGGAICMELLTPRGWASAYTVEAVVM 508
++GFV+ GGAICMELLT +GW+SAY++E+ ++
Sbjct: 304 NQGFVLGGGAICMELLTKQGWSSAYSIESCIL 335
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 350 LVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
+ FP ++PF PP + E +I V E G C+ ++T W A E V+M+
Sbjct: 55 ITFPVDYPFKPPKV-AFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMA 107
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L + FP ++PF PP + RI + G+IC+++L + W+ A T+ V++S
Sbjct: 52 LTIHFPTDYPFKPPKV-AFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLS 105
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L + FP ++PF PP + RI + G+IC+++L + W+ A T+ V++S
Sbjct: 52 LTIHFPTDYPFKPPKV-AFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLS 105
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L + P+ +PF+PP ++ + G IC+++L + WA++ T+ V++S
Sbjct: 58 LDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQ-WAASLTLRTVLLS 112
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 34.3 bits (75), Expect = 0.089
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 350 LVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMEL--LTPRGWASAYTVEAVVM 508
++F ENFP++PP + +I P G +C+ + P W +TV A+++
Sbjct: 72 VIFKENFPWSPPAITMITP---NGRFQTNTRLCLSISDYHPESWNPGWTVSAILI 123
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 350 LVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMEL--LTPRGWASAYTVEAVV 505
L+FP++FPF PP + ++ P G +C+ + P W A+TV ++
Sbjct: 61 LLFPKDFPFKPPAILMLTP---NGRFQTNTRLCLSISDYHPDTWNPAWTVSTII 111
>Z46343-3|CAA86459.1| 316|Caenorhabditis elegans Hypothetical
protein T23F11.4 protein.
Length = 316
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = -2
Query: 519 RRELITTASTVYADAQP----RGVSSSMHIAPPSITNPLSI--LGSMTRINGGANGKFSG 358
RRE+ T D P +G + + +P S P LG +T+ NG +NG +
Sbjct: 45 RREVCTQTDDNCFDPPPNKKSKGYNGEDYGSPCSSATPSEPVDLGILTKTNGNSNGNHNW 104
Query: 357 NTKCKRMFGMCSSRRSVARS 298
+T+ K + G+ S ++S
Sbjct: 105 DTESKVLRGLIRSENGRSKS 124
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 356 FPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELL 460
FP N+P++PP M+ ++ V E G +C+ +L
Sbjct: 65 FPSNYPYSPPSMK-FTTKVWHPNVYENGDLCISIL 98
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTP-RGWASAYTVEAVVM 508
+ ++F ++FP PP + EP + V G +C+ LL + W + +++ +++
Sbjct: 60 IRMLFKDDFPSTPPKCK-FEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLI 114
>U23522-1|AAC46819.3| 962|Caenorhabditis elegans Hypothetical
protein W06B4.3 protein.
Length = 962
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 174 MKELKEIKRLQESRPDPVFTVEL 242
++EL E++RL+ S PDP F +L
Sbjct: 454 LEELAEMRRLKNSNPDPAFVEKL 476
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTP-RGWASAYTVEAVVM 508
+ ++F ++FP PP + EP + V G +C+ LL + W + +++ +++
Sbjct: 60 IRMLFKDDFPSTPPKCK-FEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLI 114
>AL132952-10|CAB63384.1| 591|Caenorhabditis elegans Hypothetical
protein Y51H4A.13 protein.
Length = 591
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/101 (22%), Positives = 39/101 (38%)
Frame = -2
Query: 591 PSPREFAGGTSRRPRNPALPLHHRRRELITTASTVYADAQPRGVSSSMHIAPPSITNPLS 412
P P + G + NP LHH+ R ++ + + QPR SS + ++P
Sbjct: 292 PDPYQPHGHPAHHIPNPH-QLHHQHRRRYSSPRRFHGNHQPRRNPSSTRLVIRYGSSPPE 350
Query: 411 ILGSMTRINGGANGKFSGNTKCKRMFGMCSSRRSVARSLSG 289
++G GG + + + S S A + SG
Sbjct: 351 VVGRGGVDGGGHQQQHQHQRRTSKHSATTDSVESTASTQSG 391
>AF125445-1|AAD12803.2| 550|Caenorhabditis elegans Hypothetical
protein Y24D9B.1 protein.
Length = 550
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/101 (22%), Positives = 39/101 (38%)
Frame = -2
Query: 591 PSPREFAGGTSRRPRNPALPLHHRRRELITTASTVYADAQPRGVSSSMHIAPPSITNPLS 412
P P + G + NP LHH+ R ++ + + QPR SS + ++P
Sbjct: 292 PDPYQPHGHPAHHIPNPH-QLHHQHRRRYSSPRRFHGNHQPRRNPSSTRLVIRYGSSPPE 350
Query: 411 ILGSMTRINGGANGKFSGNTKCKRMFGMCSSRRSVARSLSG 289
++G GG + + + S S A + SG
Sbjct: 351 VVGRGGVDGGGHQQQHQHQRRTSKHSATTDSVESTASTQSG 391
>AF003386-4|AAO38631.1| 452|Caenorhabditis elegans Hypothetical
protein F59E12.6b protein.
Length = 452
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -1
Query: 505 HHRLHGVRGRPAARRQQLHAYRSTFHNESFIYSRFDDTHKRRCKWK 368
+++L G+ + ++ H Y NES +S+FDD +W+
Sbjct: 278 YYKLTGLIVHVGSSAKEGHFYSFVLQNESSRWSKFDDDRVSNVRWE 323
>AF003386-3|AAO38630.1| 499|Caenorhabditis elegans Hypothetical
protein F59E12.6a protein.
Length = 499
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -1
Query: 505 HHRLHGVRGRPAARRQQLHAYRSTFHNESFIYSRFDDTHKRRCKWK 368
+++L G+ + ++ H Y NES +S+FDD +W+
Sbjct: 325 YYKLTGLIVHVGSSAKEGHFYSFVLQNESSRWSKFDDDRVSNVRWE 370
>Z22180-10|CAO82052.1| 360|Caenorhabditis elegans Hypothetical
protein K11H3.1d protein.
Length = 360
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 171 LMKELKEIKRLQES-RPDPVFTVELVNDNFSSGT*GCTRSIQ-RVILPRTYENCTFR 335
+ +E+KEI +++ S E+ NDNF T GC R + +L + + FR
Sbjct: 143 ISEEIKEILKIEVSVLMGANLAPEVANDNFCEATIGCKRKAEDGPLLKKLFHTDNFR 199
>Z22180-9|CAO82051.1| 304|Caenorhabditis elegans Hypothetical
protein K11H3.1c protein.
Length = 304
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 171 LMKELKEIKRLQES-RPDPVFTVELVNDNFSSGT*GCTRSIQ-RVILPRTYENCTFR 335
+ +E+KEI +++ S E+ NDNF T GC R + +L + + FR
Sbjct: 87 ISEEIKEILKIEVSVLMGANLAPEVANDNFCEATIGCKRKAEDGPLLKKLFHTDNFR 143
>Z22180-2|CAD54146.1| 392|Caenorhabditis elegans Hypothetical
protein K11H3.1b protein.
Length = 392
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 171 LMKELKEIKRLQES-RPDPVFTVELVNDNFSSGT*GCTRSIQ-RVILPRTYENCTFR 335
+ +E+KEI +++ S E+ NDNF T GC R + +L + + FR
Sbjct: 175 ISEEIKEILKIEVSVLMGANLAPEVANDNFCEATIGCKRKAEDGPLLKKLFHTDNFR 231
>Z22180-1|CAA80176.2| 371|Caenorhabditis elegans Hypothetical
protein K11H3.1a protein.
Length = 371
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 171 LMKELKEIKRLQES-RPDPVFTVELVNDNFSSGT*GCTRSIQ-RVILPRTYENCTFR 335
+ +E+KEI +++ S E+ NDNF T GC R + +L + + FR
Sbjct: 154 ISEEIKEILKIEVSVLMGANLAPEVANDNFCEATIGCKRKAEDGPLLKKLFHTDNFR 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,624,351
Number of Sequences: 27780
Number of extensions: 348622
Number of successful extensions: 1080
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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