Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0704.Seq
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 114 SFLQVRLRPGLAGTLVVASAG-PTPSL 37
           SF++  L+PG A +L  ++AG PTP +
Sbjct: 427 SFIEQTLQPGPAVSLKCSAAGNPTPQV 453


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 114 SFLQVRLRPGLAGTLVVASAG-PTPSL 37
           SF++  L+PG A +L  ++AG PTP +
Sbjct: 427 SFIEQTLQPGPAVSLKCSAAGNPTPQV 453


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 205 RRADPTLCLRWSLSTTIFRVAREAAPDRSRE*SCHGPTRTAHSEH 339
           RR   + CL       + R   E+    +R  SC G T T +S+H
Sbjct: 349 RRHSDSCCLCLDSMNAVIRNFNES---ENRRNSCLGSTETYYSKH 390


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 263 WHVRLHQIDPESDLATDLRELHIPNILL 346
           W++   ++DP+SD    +RE  + N +L
Sbjct: 810 WNMNNKRLDPKSDSRYTIREEILANGVL 837


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 117 LSFLQVRLRPGLAGTLVVASAGPTP 43
           L+ ++      LAGT   A+A PTP
Sbjct: 30  LTLVKAETPEHLAGTSTTAAATPTP 54


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 353 LSVRGCSECAVLVGPWQDHSLD 288
           L V GC+  A    P  D+SLD
Sbjct: 6   LIVLGCTRSAHFARPGGDYSLD 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,297
Number of Sequences: 438
Number of extensions: 4452
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)