Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0704.Seq
(724 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E... 38 0.005
At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative ... 37 0.016
At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)... 36 0.021
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro... 36 0.027
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ... 36 0.036
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ... 36 0.036
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 36 0.036
At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)... 36 0.036
At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative ... 36 0.036
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 35 0.047
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 35 0.047
At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E... 35 0.047
At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E... 35 0.047
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 35 0.047
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 35 0.047
At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)... 33 0.14
At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)... 33 0.19
At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E... 33 0.19
At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative ... 33 0.25
At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative ... 33 0.25
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E... 31 0.58
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)... 31 0.58
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id... 31 0.77
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 30 1.4
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 29 3.1
At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)... 28 5.5
At4g03360.1 68417.m00458 ubiquitin family protein contains INTER... 28 7.2
At4g02950.1 68417.m00402 ubiquitin family protein contains INTER... 28 7.2
At1g64710.1 68414.m07337 alcohol dehydrogenase, putative similar... 27 9.5
At1g45160.1 68414.m05177 protein kinase family protein contains ... 27 9.5
>At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 149
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/101 (22%), Positives = 46/101 (45%)
Frame = +2
Query: 209 EPTRPCVYGGACQRQFFEWHVRLHQIDPESDLATDLRELHIPNILLHLVFPENFPFAPPF 388
+P C++ G F W + ES + + L+ + FP ++PF PP
Sbjct: 16 DPPTSCIFAGPVAEDMFHWQATIMG-PAESPYSGGV-------FLVTIHFPPDYPFKPPK 67
Query: 389 MRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
+ ++ + G+IC+++L + W+ A T+ V++S
Sbjct: 68 V-AFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLS 106
>At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P35133 Ubiquitin-conjugating
enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein
ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/57 (29%), Positives = 34/57 (59%)
Frame = +2
Query: 341 LLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L+++ FP ++PF PP + V ++ + G IC+++L + W+ A T+ V++S
Sbjct: 51 LVNIHFPPDYPFKPPKV-VFRTKVFHPNINSNGNICLDILKDQ-WSPALTISKVLLS 105
>At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)
E2; identical to ubiquitin-conjugating enzyme 15
GI:2801442 from [Arabidopsis thaliana]
Length = 161
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L + FPE++P P + + P + G IC+++L W+ A TV +V +S
Sbjct: 65 LQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYD-SWSPAMTVNSVCIS 119
>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
protein similar to Ubiquitin-conjugating enzyme E2-16
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) from {Schizosaccharomyces pombe}
SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
Pfam profile PF00179: Ubiquitin-conjugating enzyme
Length = 154
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L + FP ++PF PP P I + + G+ICM +L + W A VE V++S
Sbjct: 58 LSIKFPTDYPFKPPKFTFKTP-IYHPNINDEGSICMNILKDK-WTPALMVEKVLLS 111
>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 35.5 bits (78), Expect = 0.036
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +2
Query: 341 LLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L+ + FP ++PF PP + ++ + G+IC+++L + W+ A TV V++S
Sbjct: 51 LVTIHFPPDYPFKPPKV-AFRTKVYHPNINSNGSICLDILKEQ-WSPALTVSKVLLS 105
>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 35.5 bits (78), Expect = 0.036
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +2
Query: 341 LLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L+ + FP ++PF PP + ++ + G+IC+++L + W+ A TV V++S
Sbjct: 51 LVTIHFPPDYPFKPPKV-AFRTKVYHPNINSNGSICLDILKEQ-WSPALTVSKVLLS 105
>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin conjugating enzyme
[Lycopersicon esculentum] GI:886679; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 192
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
+ + P+ +PF PP M+ + GAIC+++L + W+ A T++ ++S
Sbjct: 54 IDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQ-WSPALTLKTALVS 108
>At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)
E2; identical to gi:12643427, SP:P35134
Length = 148
Score = 35.5 bits (78), Expect = 0.036
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +2
Query: 341 LLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L+ + FP ++PF PP + + ++ + G+IC+++L + W+ A T+ V++S
Sbjct: 51 LVSIHFPPDYPFKPPKVS-FKTKVYHPNINSNGSICLDILKEQ-WSPALTISKVLLS 105
>At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative
identical or nearly so to Ubiquitin-conjugating enzymes
SP|P35132, SP|P35131, SP|P35133 from {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 35.5 bits (78), Expect = 0.036
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +2
Query: 341 LLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L+ + FP ++PF PP + ++ V G+IC+++L + W+ A T+ V++S
Sbjct: 51 LVTIHFPPDYPFKPPKV-AFRTKVFHPNVNSNGSICLDILKEQ-WSPALTISKVLLS 105
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +2
Query: 341 LLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L+ + FP ++PF PP + ++ + G+IC+++L + W+ A T+ V++S
Sbjct: 51 LVTIHFPPDYPFKPPKV-AFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLS 105
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +2
Query: 341 LLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L+ + FP ++PF PP + ++ + G+IC+++L + W+ A T+ V++S
Sbjct: 51 LVTIHFPPDYPFKPPKV-AFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLS 105
>At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +2
Query: 341 LLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L+ + FP ++PF PP + ++ + G+IC+++L + W+ A T+ V++S
Sbjct: 51 LVTIHFPPDYPFKPPKV-AFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLS 105
>At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +2
Query: 341 LLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L+ + FP ++PF PP + ++ + G+IC+++L + W+ A T+ V++S
Sbjct: 51 LVTIHFPPDYPFKPPKV-AFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLS 105
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +2
Query: 341 LLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L+ + FP ++PF PP + ++ + G+IC+++L + W+ A T+ V++S
Sbjct: 81 LVTIHFPPDYPFKPPKV-AFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLS 135
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +2
Query: 341 LLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L+ + FP ++PF PP + ++ + G+IC+++L + W+ A T+ V++S
Sbjct: 51 LVTIHFPPDYPFKPPKV-AFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLS 105
>At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)
E2; identical to gi:2801444, GB:AAC39325 from
[Arabidopsis thaliana] (Plant Mol. Biol. 23 (2), 387-396
(1993))
Length = 161
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L + FPE++P P + + P + G IC+++L W+ A TV ++ +S
Sbjct: 65 LQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYD-SWSPAMTVSSICIS 119
>At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)
E2; identical to gi:2801448
Length = 161
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L + FP+++P P + + P + G IC+++L W+ A TV +V +S
Sbjct: 65 LQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYD-SWSPAMTVSSVCIS 119
>At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 145
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +2
Query: 341 LLHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVM 508
L+ + FP ++PF PP + ++ + G+IC+++L + W+ A T+ V +
Sbjct: 51 LVTIHFPPDYPFKPPKV-AFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVTL 104
>At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative
similar to SP|O60015 Ubiquitin-conjugating enzyme E2-21
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) {Pichia angusta}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 157
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 359 PENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAV 502
PE +P PP +R + + G IC+++L W+ A+T+++V
Sbjct: 61 PEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-KNAWSPAWTLQSV 107
>At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative
similar to Ubiquitin-conjugating enzyme E2
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
from {Xenopus laevis} SP|P51669, {Schizosaccharomyces
pombe} SP|P46595, {Caenorhabditis elegans} SP|P35129;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 409
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLT--PRG-WASAYTVEAVVMS 511
L + PE +PF PP + P I + G IC+++L P+G W + + V+ S
Sbjct: 66 LKIQIPERYPFQPPIVSFATP-IYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTS 123
>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
identical to gi:992703, SP:P42747
Length = 198
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Frame = +2
Query: 350 LVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRG------------WASAYTV 493
+ FP+N+P +PP +R V G +C+ +L P G W +TV
Sbjct: 90 MTFPQNYPNSPPTVRFTSDMWHPN-VYSDGRVCISILHPPGDDPSGYELASERWTPVHTV 148
Query: 494 EAVVMS 511
E++++S
Sbjct: 149 ESIMLS 154
>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
E2; UbcAT3; identical to gi:2129757, S46656
Length = 167
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Frame = +2
Query: 356 FPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRG------------WASAYTVEA 499
FPEN+P +PP + V G +C+ +L P G W +TVE+
Sbjct: 61 FPENYPVSPPTVTFTSEMWHPN-VYSDGKVCISILHPPGDDPHGYELASERWTPVHTVES 119
Query: 500 VVMS 511
+V+S
Sbjct: 120 IVLS 123
>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
identical to ubiquitin-conjugating enzyme COP10
[Arabidopsis thaliana] GI:20065779; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 182
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L ++FP ++PF PP + V + RI V G + + +L W+ A T+ V+ +
Sbjct: 87 LDIIFPSDYPFKPPKL-VFKTRIYHCNVDTAGDLSVNILRD-SWSPALTITKVLQA 140
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Frame = +2
Query: 356 FPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRG------------WASAYTVEA 499
FP+N+P +PP +R I V G +C+ +L P G W +TVE+
Sbjct: 60 FPQNYPNSPPTVRFTSD-IWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVES 118
Query: 500 VVMS 511
+++S
Sbjct: 119 IMLS 122
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = -2
Query: 420 PLSILGSMTRINGGANGKFSGN----TKCKRMFGMCSSRRSVARSLSGSIWCSLTCHSKN 253
P+S + + +GG G+FSG + +FG +S+ SV SL+G+I HSK
Sbjct: 79 PVSQVSRNMQGSGGPGGRFSGRGDPGSGPVSIFGASTSKISVDASLAGAIIGKGGIHSKQ 138
Query: 252 -CR 247
CR
Sbjct: 139 ICR 141
>At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)
E2; identical to gi:2801446
Length = 161
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +2
Query: 344 LHLVFPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPRGWASAYTVEAVVMS 511
L + FPE++P P + P + G IC+++L W+ A + ++ +S
Sbjct: 65 LQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYD-SWSPAMRLSSICLS 119
>At4g03360.1 68417.m00458 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 284
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 356 FPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPR 469
F +N PP MRV+ RID G ++ ELL PR
Sbjct: 120 FSKNQQDRPPLMRVVAKRIDNGSSRPSYSL-DELLAPR 156
>At4g02950.1 68417.m00402 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 356 FPENFPFAPPFMRVIEPRIDKGFVMEGGAICMELLTPR 469
F +N PP MRV+ RID G ++ ELL PR
Sbjct: 154 FSKNQQDRPPLMRVVAKRIDNGSSRPSYSL-DELLAPR 190
>At1g64710.1 68414.m07337 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase GI:551257 from [Nicotiana tabacum]
Length = 396
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 280 VQPHVPLEKLSLTSSTVNTGSG 215
V P PLEK+SL S V+TG G
Sbjct: 182 VDPLFPLEKISLLSCGVSTGVG 203
>At1g45160.1 68414.m05177 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 1067
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -3
Query: 260 RKIVVDKLHRKHRVGSALLQPFDFLQFLHKTSRTHCSCPITYF-GGSRYFLFYK*GCVPD 84
RK ++++ ++ + + PF F T R + + Y GG Y L K GC+ +
Sbjct: 708 RKNDIERILQERNILITVRYPFLVRFFYSFTCRDNLYLVMEYLNGGDLYSLLQKVGCLDE 767
Query: 83 SPAR*WSPPLVL 48
AR + LVL
Sbjct: 768 EIARIYIAELVL 779
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,867,832
Number of Sequences: 28952
Number of extensions: 328367
Number of successful extensions: 877
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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