Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0702.Seq
         (769 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q01MQ2 Cluster: OSIGBa0112G01.1 protein; n=4; Oryza sat...    34   3.4  
UniRef50_A6BEA3 Cluster: Putative uncharacterized protein; n=2; ...    34   4.5  

>UniRef50_Q01MQ2 Cluster: OSIGBa0112G01.1 protein; n=4; Oryza
           sativa|Rep: OSIGBa0112G01.1 protein - Oryza sativa
           (Rice)
          Length = 471

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +2

Query: 335 EWSRQSSVSIEKVHIFFGSKHGPSTL*DYNSHEKLLEYEQSENIFAQHDQF 487
           EW  + S SI+   I  G   GP TL D N+ E+  EYE   N     D+F
Sbjct: 315 EWVCKDSCSIQPCQIIDGP--GPWTLQDINNQERGFEYEDGNNEAVVEDRF 363


>UniRef50_A6BEA3 Cluster: Putative uncharacterized protein; n=2;
           Dorea longicatena DSM 13814|Rep: Putative
           uncharacterized protein - Dorea longicatena DSM 13814
          Length = 163

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 320 FRFVFEWSRQSSVSIEKVHIFFGSKHGPSTL*DYNSHEKLLEYEQSEN 463
           ++ VFE      +S EK+   FG   G + +  Y +  K+LEY ++EN
Sbjct: 114 YKIVFELRIHGELSFEKIGRIFGKSSGWARVTYYRAKMKILEYMEAEN 161


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 712,903,971
Number of Sequences: 1657284
Number of extensions: 13563835
Number of successful extensions: 29162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29157
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)