Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0702.Seq
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical
           protein K06H6.6 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 460 EYFCSTRSIYVGHVNSASLFNSLPSSNVKTLMNAVN 567
           +YF S R+  +G++ ++  F SLP SN  + +  V+
Sbjct: 153 KYFPSMRNELIGYLKTSENFGSLPKSNETSFVTCVH 188


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
           protein R09E10.7 protein.
          Length = 1717

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 427 T*KVTRIR-AEREYFCSTRSIYVGHVNSASLFNSLPSSNVK---TLMNAVNKF*D 579
           T KV R R  E    CS RS +  HV + S++     SN+K   T+ +A+N   D
Sbjct: 234 TVKVDRCRIVECTCECSNRSSWCKHVVALSIYRIYERSNIKFKETIADAINSMSD 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,525,111
Number of Sequences: 27780
Number of extensions: 330186
Number of successful extensions: 777
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)