Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0702.Seq
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67310.1 68418.m08488 cytochrome P450 family protein                31   0.64 
At1g10880.1 68414.m01250 expressed protein contains Pfam profile...    29   2.6  
At1g60800.1 68414.m06844 leucine-rich repeat family protein / pr...    29   3.4  

>At5g67310.1 68418.m08488 cytochrome P450 family protein
          Length = 507

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 188 LSREPRLHSRLYNILYNLILSKETPDEPSKHIRK 87
           L  +P L+   YNIL +++  K   DE +K +RK
Sbjct: 184 LKLQPFLYGLTYNILMSMVAGKREEDEETKEVRK 217


>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 651

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 439 TRIRAEREYFCSTRSIYVGHVNSASLFNSLPSS 537
           T  R +RE+ C    ++V   + ASL+ SLPS+
Sbjct: 539 TYSRKQREFECERDQVFVNAPSKASLWKSLPST 571


>At1g60800.1 68414.m06844 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 632

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = -3

Query: 740 PSGRLGFLTSDGVANLTAIYIRTVLEYQQSRISGVNFI*NTLYMIKKKQRIG*LS*NLFT 561
           PS  L    S  + NLT  Y+++V+  Q + I+G   I  T+  ++K Q +  LS N FT
Sbjct: 82  PSQSLSGTLSPRIGNLT--YLQSVV-LQNNAITGP--IPETIGRLEKLQSLD-LSNNSFT 135

Query: 560 AFI-----SVFTLEEGRLLNNDALFTCPT*IDRVE 471
             I      +  L   RL NN  + TCP  + ++E
Sbjct: 136 GEIPASLGELKNLNYLRLNNNSLIGTCPESLSKIE 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,244,001
Number of Sequences: 28952
Number of extensions: 296869
Number of successful extensions: 575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)