Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0699.Seq
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     27   0.22 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    27   0.22 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           27   0.22 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    27   0.22 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    24   1.2  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    24   1.5  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    24   1.5  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    24   1.5  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   2.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.7  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    23   3.6  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   3.6  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   3.6  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   3.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.7  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   6.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.2  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 66  QPDSMATITMKPEYPPSEVYS-TSEPPP 146
           QP  ++ + + P++PPSE Y+  S  PP
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPP 45


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 66  QPDSMATITMKPEYPPSEVYS-TSEPPP 146
           QP  ++ + + P++PPSE Y+  S  PP
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPP 45


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 66  QPDSMATITMKPEYPPSEVYS-TSEPPP 146
           QP  ++ + + P++PPSE Y+  S  PP
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPP 45


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 66  QPDSMATITMKPEYPPSEVYS-TSEPPP 146
           QP  ++ + + P++PPSE Y+  S  PP
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPP 45


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 145 GGGSDVLYTSEGGYSGFIVIVAI--ESGW 65
           G G+   YT E G  G+  IV +  E GW
Sbjct: 283 GAGNSGKYTGEAGMLGYNEIVELQKEGGW 311


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 308 CRALHPA--ALADGMMNELLPTRSQYKGSQ 225
           CRA+  A  ALA+   N L+PT S  K ++
Sbjct: 180 CRAVGNASTALAESFQNVLVPTASNSKSTK 209


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 308 CRALHPA--ALADGMMNELLPTRSQYKGSQ 225
           CRA+  A  ALA+   N L+PT S  K ++
Sbjct: 180 CRAVGNASTALAESFQNVLVPTASNSKSTK 209


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 308 CRALHPA--ALADGMMNELLPTRSQYKGSQ 225
           CRA+  A  ALA+   N L+PT S  K ++
Sbjct: 180 CRAVGNASTALAESFQNVLVPTASNSKSTK 209


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 175 TEVDTLCR*AGGGSDVLYTSEGGYSGFIVI 86
           T+ D     +GGG+   YT+E G+  F  I
Sbjct: 773 TQFDIGAPASGGGTPGKYTAEAGFMSFYEI 802



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 148 AGGGSDVLYTSEGGYSGF 95
           +GGG +  YT E G+  +
Sbjct: 353 SGGGKEGTYTKESGFLAY 370


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 60   EHQPDSMATITMKPEYPPSEVYSTSEPPPAY 152
            E  P   A    + E PPS   ST  PPP +
Sbjct: 1780 EEPPSVEAVEEEREEAPPSVHSSTVVPPPQH 1810


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 619 RPMFKLPIQFDLDELAGAFLANNQ-KGRMNCVVERRNDDPHGE 744
           RP  K   ++D  +L     ++   K   NC++ER    P GE
Sbjct: 19  RPQEKYTTKYDNIDLEEILKSDRLLKNYFNCLMERGTCSPDGE 61


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 565 HHSSLVSHSYRRQFSAICLVYFGLGMVECVV 473
           HH S +   +   F  + L+ FG+  V  V+
Sbjct: 510 HHLSKLVKLFNETFGIVLLLMFGVSFVVIVI 540


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 565 HHSSLVSHSYRRQFSAICLVYFGLGMVECVV 473
           HH S +   +   F  + L+ FG+  V  V+
Sbjct: 235 HHLSKLVKLFNETFGIVLLLMFGVSFVVIVI 265


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +3

Query: 78  MATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAA 197
           + T+    E PP   Y   EPP  Y  R        K+ A
Sbjct: 11  LPTVLPHQEVPPPFGYYHEEPPLFYEERPDFVAPYIKVEA 50


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 203 SGRFLLHLGNLYIGFELVAARSSCHQLEQLDA 298
           +GRF  H  NLY  F +    +    L+ +D+
Sbjct: 169 TGRFTFHKKNLYYSFYISDKAARPRSLQFVDS 200


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 3   PRDEQ*INFDKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEP 140
           P D+  + F   Y +V+ KEH  + + TI  +   P   +Y   +P
Sbjct: 30  PTDKPFLFFGSFYNLVIRKEHIFERIRTIYNQFSTPYVGIYIFHQP 75


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 139 GSDVLYTSEGGYSGF 95
           G  VLYT   GY GF
Sbjct: 481 GDAVLYTIHMGYHGF 495


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,952
Number of Sequences: 336
Number of extensions: 3642
Number of successful extensions: 23
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)