Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0699.Seq
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    31   0.24 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.0  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   3.9  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   6.8  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   6.8  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   9.0  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 30  DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 152
           +K+  VV EK   P  + T     E  PSE Y+  EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 69  PDSMATITMKPEYPPSEVYSTSEPPP 146
           P   +T  + P  PP+   STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 69  PDSMATITMKPEYPPSEVYSTSEPPP 146
           P   +T  + P  PP+   STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 57  KEHQPDSMATITMKPEYPPSEVYSTS 134
           + +  DS +TI  +PEYPP   +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = +2

Query: 371 PLANAHALHGVPPMLSSVLPETSQPSSSRPSLFK-----DDALNHAESKINKTNCRKLTT 535
           PL++  A   +PP+ +     ++ P  +RPSL        + L++  S I+  N   +  
Sbjct: 363 PLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKSPSVSNILSNQLSPISSANNDVMAR 422

Query: 536 IRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCSNCL 640
           ++        +  S T+   R+ +L+R D  S+ +
Sbjct: 423 LQPKSPIPATKSYSATIQTPRSPSLRRADSTSHII 457


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 136 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 47
           S V    +G Y+GFIV++A+ S    F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = +2

Query: 248  ELVAARSSCHQ--LEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHALHGVPPMLSS 421
            +L+  +   H+  + +LD    + +  +  A+  D  V+DE   L   +A + +   L  
Sbjct: 769  DLLVRKRLLHEEPMTKLDLSTLRLIRTDSEAF--DTFVSDELNSLCATNAYNRISTFLRM 826

Query: 422  VLPETSQPSSSRPSLFKDDALNHA-ESKINKTNCRK 526
             + E  +P   + S FK+   N   + +++K N +K
Sbjct: 827  QIDEECKPCQFKKSNFKEHFQNKIYQEQLDKLNFQK 862


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 116 RRRIFRLHSYCSHRVWLVFFFHHDLILFIKIYL 18
           RRRIFR H      +W+  FF   L++  +IY+
Sbjct: 32  RRRIFRPHFSQFWTIWMK-FFSIALVIITQIYV 63


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 66  QPDSMATITMKPEYPPSEVYSTSEPP 143
           QP + +T+   P  PPS  Y+T++PP
Sbjct: 86  QPGNASTMYASP--PPSSNYNTAKPP 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,245
Number of Sequences: 5004
Number of extensions: 58480
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)