Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0699.Seq
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0963 + 24857033-24857500,24857611-24857745,24858430-24858516 30 1.8
06_03_0598 + 22621765-22624795,22624903-22625066,22625290-226253... 30 1.8
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443... 30 1.8
05_05_0029 + 21694448-21694567,21694666-21695117,21695214-216955... 29 3.1
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 3.1
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 4.1
03_05_0781 + 27654764-27655429,27655902-27656004,27656535-276565... 29 5.4
12_02_1197 + 26915933-26916298 28 7.1
08_02_0365 - 16271106-16271327,16271504-16272241,16273034-16273120 28 7.1
06_03_0596 + 22608835-22610263,22610411-22610531,22610765-226118... 28 7.1
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 28 7.1
12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638 28 9.4
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 9.4
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 28 9.4
01_06_0710 + 31384519-31385493 28 9.4
>12_02_0963 + 24857033-24857500,24857611-24857745,24858430-24858516
Length = 229
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +2
Query: 359 DEPLP-LANAHALHGVPPMLSSVLPETSQPS-SSRPSLFKDDALNHAESKINKTNCRKLT 532
+ PLP LANA L + + T P + P LF ++ KI T+C L
Sbjct: 125 ETPLPQLANA-VLRAMNDSKFYTVGNTKMPYVKNAPRLFALANVSAEFKKIASTSCTGLL 183
Query: 533 TIRMTHQTRVMRVLSPTVLLKRTTNLKRLD 622
TIR + +L T+L + TN R D
Sbjct: 184 TIRPESTLVRVSILLATLLSRLRTNFCRFD 213
>06_03_0598 +
22621765-22624795,22624903-22625066,22625290-22625328,
22625479-22625487
Length = 1080
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 215 LLHLGNLYIGFELVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHAL 394
+L L N +I E+ A+ S C+ L+ +D +K + +GN L + + LA+
Sbjct: 152 ILDLSNNFIQGEIPASLSQCNHLKDIDLSKNKLKGMIPSDFGN--LPKMQIIVLASNRLT 209
Query: 395 HGVPPMLSS 421
+PP L S
Sbjct: 210 GDIPPSLGS 218
>02_01_0597 -
4433105-4433467,4433671-4433860,4434569-4434786,
4434882-4436556,4437137-4438113
Length = 1140
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 503 INKTNCRKLTTIRMTHQTRV--MRVLSPTVLLKRTTNLKRLDRCSNCLFSLTLMSWRALS 676
++ T C+ L + H+ + +++ ++ TT+ K +D CSNC S +L A+S
Sbjct: 296 MSSTGCKDLEAMIKEHEKFIGDQKIIMQSLSKDVTTSKKLVDDCSNCQLSASLRPHDAVS 355
>05_05_0029 +
21694448-21694567,21694666-21695117,21695214-21695529,
21695863-21697122
Length = 715
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +2
Query: 227 GNLYIGFELVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHALHGVP 406
G++ +G +L +C Q ++ + DKE++ G + D P + ++ G+P
Sbjct: 297 GDVELGNKLNQIEKACEQRDRAAQIKDKEVSEVGGPSDKNLFADDSPSECLSTDSVFGLP 356
Query: 407 P 409
P
Sbjct: 357 P 357
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 365 PLPLANAHA-LHGVPPMLSSVLPETSQPSSSRPSLFKDDALN 487
P P A +H H P +L+S+LP PSSS PSL +LN
Sbjct: 2522 PSPYATSHGNQHQRPSILASLLPFVL-PSSSNPSLTAPLSLN 2562
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 93 MKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 179
M P PP +++ PPP + H +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 63 HQPDSMA-TITMKPEYPPSEVYSTSEPPPAYRHRVSTS 173
H+ D+ A T T+ PPSE + PPPA +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281
>03_05_0781 +
27654764-27655429,27655902-27656004,27656535-27656590,
27656895-27657059,27657078-27657083,27657657-27657770,
27658170-27658262
Length = 400
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 669 RFLSKQPKRPYELRGGAS*RRPPWRDVFPS 758
R LS P+RP + RGG +PP FPS
Sbjct: 15 RLLSLPPRRPVQPRGGIFLLKPPPPPPFPS 44
>12_02_1197 + 26915933-26916298
Length = 121
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 142 GGSDVLYTSEGGYSGFIVIVAIESGW 65
GG DVL + GG +++VA ES W
Sbjct: 3 GGEDVLVVAPGGGRDALLLVAQESAW 28
>08_02_0365 - 16271106-16271327,16271504-16272241,16273034-16273120
Length = 348
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 365 AHPLPG-HHFRRLCLPKRVLCRALHPAALADGMMNELLPTRSQYKGSQDEGG 213
A P+P FRR+ + CR LH A AD + EL+ + KG GG
Sbjct: 2 AKPVPVCRGFRRIIFARAAFCRELHLAKEAD--LGELVSSGVLVKGQGSCGG 51
>06_03_0596 +
22608835-22610263,22610411-22610531,22610765-22611864,
22611969-22612327
Length = 1002
Score = 28.3 bits (60), Expect = 7.1
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +2
Query: 215 LLHLGNLYIGFELVAARSSCHQLEQLDAMLDKELALEGR---AYGNDALVADEPLPLANA 385
+L L N +I E+ A+ S C++L+++ +K L+GR A+GN L E + LA+
Sbjct: 152 ILDLSNNFIQGEIPASLSQCNRLKKIHLSKNK---LQGRIPYAFGN--LPKLEKVVLASN 206
Query: 386 HALHGVPPMLSSVLPET 436
+P L S L T
Sbjct: 207 RLTGDIPASLGSSLSLT 223
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 86 CSHRVWLVFFFHHDL-ILFIKIYLLLVS 6
C H+ WL + HH++ ILF+K L L++
Sbjct: 403 CFHKSWLRYNAHHNIQILFVKHNLRLIT 430
>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
Length = 504
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 512 TNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCSNCLFSLTL 655
T + ++ +R+T R MR+L+ + + + L RC CL L L
Sbjct: 332 TVVKGVSVVRLTEAVRTMRILAINMFVLNLAKVIDLMRCFPCLEKLYL 379
>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -1
Query: 128 AVYF-RRRIFRLHSYCSHRVWLV 63
AV+F R++ RLH +CSH V+++
Sbjct: 1233 AVHFPNRKMRRLHEFCSHSVFVI 1255
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 185 EDCSTNSGRFLLHLGNL 235
EDC G FL HLGNL
Sbjct: 574 EDCDITGGYFLKHLGNL 590
>01_06_0710 + 31384519-31385493
Length = 324
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/80 (27%), Positives = 30/80 (37%)
Frame = +2
Query: 218 LHLGNLYIGFELVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHALH 397
L +GN E AAR H+ D++L + P+P AL
Sbjct: 122 LSVGNDGDTAEAAAARQLYHRRRHYSVGGDRDLQTLRNLIPFSRAASPIPVPAPFVPALK 181
Query: 398 GVPPMLSSVLPETSQPSSSR 457
PP+L S E +P S R
Sbjct: 182 TTPPLLPSDTDEEKRPRSRR 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,131,795
Number of Sequences: 37544
Number of extensions: 455668
Number of successful extensions: 1624
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -