Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0698.Seq
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    29   0.55 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    29   0.97 
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    28   1.3  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.7  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    27   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.2  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    26   5.2  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   5.2  

>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 647 LQYGVYNIRFYGFWRRYTFQHICYRHPYTLHFLLYTK 537
           L Y V+++    F R+++ + I   HP+ LH  + TK
Sbjct: 26  LSYFVFDVLMLPFTRQFSLEDITISHPFALHEQVPTK 62


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 320  CLICKILSSLGYPGCAGELLAVHILQMFLSHV*LCYLKELQKDSNSALY 174
            C+IC+ +   G+    G L     L+ +L H   C + + + + N+A Y
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNNAYY 1140


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +3

Query: 474 NGSWYQVSQHFKGYFTQPRSQL-RIEKEVEGVWVSVADVLKSI--SSPKA 614
           NG   QV++   G  +Q R  + ++EK+ E +  S+ D LKS   SSPK+
Sbjct: 324 NGVANQVNKGVTGVASQVRKPVGKLEKKFENLEKSIGDTLKSSIRSSPKS 373


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 391 SRLALEKWKQERISEMGVEEFNRFYQAQMAVGTKFHNTLRVTSLNL 528
           SRL+++      I + G  E    Y  Q A+ TK  N  R+T +++
Sbjct: 629 SRLSVDSSPWISIQDYGYSELGNVYFVQNAIPTKRQNRWRITFISI 674


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 208 KNSKKIQTVPCILPHFVI*SLNHCTVCKRSNHSIINDKFHRIFFS 74
           +N+ ++  V C L HF+  S N  +V     H       H IFFS
Sbjct: 39  ENTNRLSEVQCKLTHFLSSSENSSSVRNTRTHK-FKQLLHYIFFS 82


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 301  KILQIKHHRNDYAEQYPSVTLILNKTMTEESRLALEKWKQERISEMGVEEFNRF 462
            K+ Q +  +N Y +  P  T   N+T++  S+LA E  KQ+  S+  +E+   +
Sbjct: 1090 KLFQAEDTKNSYDQTSPEATQERNRTIS--SKLA-EMEKQKNESKAALEQMKNY 1140


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -1

Query: 720 YQTSSTRLKSVCLRNQQWHQKFPYTSVRGVQHSILWLLEKIYFSTHLLQT 571
           YQ    RL S   + + W Q FP T+V  + + I  LL K   S+ L +T
Sbjct: 390 YQFDIYRLMSRVTKGR-WAQFFPITNVLWLHYLIHQLLHKKNLSSPLTET 438


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 508 LKCCETWYQLPFELGKIY*ILQLPFRK 428
           LK  E++++ P E+ K   IL+LP RK
Sbjct: 110 LKSHESYWEPPLEISKDLKILRLPIRK 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,379,319
Number of Sequences: 5004
Number of extensions: 75075
Number of successful extensions: 221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)