Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0698.Seq
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776... 32 0.44
01_06_0162 + 27117939-27118466,27119782-27119970,27120068-271201... 31 1.3
11_03_0010 - 8922361-8922375,8923888-8924610 29 4.1
01_05_0270 - 20271859-20272866,20273043-20273058,20273455-202737... 29 4.1
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 29 5.4
01_04_0121 - 16307839-16308315,16308394-16308793,16308978-163094... 29 5.4
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 28 7.1
04_03_0500 + 16585157-16585201,16586840-16586978,16587456-165875... 28 7.1
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 28 7.1
01_06_0157 + 27075179-27075529,27075849-27076043,27077705-270780... 28 9.4
>01_05_0699 -
24376987-24377154,24377259-24377406,24377530-24377645,
24377743-24377925,24377998-24378186,24378273-24378497,
24378514-24378759,24378836-24378983,24379126-24379241,
24379441-24379497,24379735-24379923,24380001-24380150,
24380323-24380404,24380484-24380601,24380713-24380899,
24381044-24381138,24381223-24381277,24381376-24381567,
24381657-24381853,24382534-24382684
Length = 1003
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 386 KSLGWLWRSGNKSGFPKWELKNLIDFTKLKWQL 484
K L + GN+ GFP W L+N I F L+W++
Sbjct: 230 KLLFGFYDHGNR-GFPGWALRNYIAFVSLRWKI 261
>01_06_0162 +
27117939-27118466,27119782-27119970,27120068-27120159,
27121126-27121185,27121302-27121392,27121679-27121882,
27121937-27122338
Length = 521
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 188 LNLFGVLLNNTAIRGLKTSVVCVQPKVHQRNLDIPVKIKSCRLNTTEMIM 337
LNL ++LN IR L T V+ V+ +H R I ++ R NTT +I+
Sbjct: 303 LNLVSIILNQE-IRRLATQVIRVKWSLHAREEIIIELLRHLRGNTTRVIL 351
>11_03_0010 - 8922361-8922375,8923888-8924610
Length = 245
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 739 AIDFLGLSDFFHSIKVGLSS*SAMASKIPLYFSTGC 632
A+ L + D HSI GLS+ S +P +STGC
Sbjct: 173 ALQPLPVEDRLHSIHDGLSALFRDGSDVPAAYSTGC 208
>01_05_0270 -
20271859-20272866,20273043-20273058,20273455-20273756,
20273932-20274231
Length = 541
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 528 RSQLRIEKEVEGVWVSVADVLKSISSPKAIESNVVHPVLKYRGIFDAIADY 680
RS + +GV SV + +I +PK +E + VHP L+ + DY
Sbjct: 239 RSLETVSHTFDGVLRSVLKLAANIINPKDLEFSTVHPCLENPDFWPHFNDY 289
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 182 HCLNLFGVLLNNTAIRGLKTSVVCVQ 259
H LNL ++L+NT ++ L T++ C+Q
Sbjct: 577 HLLNLQALILSNTYLKTLPTNIGCLQ 602
>01_04_0121 -
16307839-16308315,16308394-16308793,16308978-16309452,
16309936-16310353
Length = 589
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +1
Query: 241 ICSMCTAKSSPAQPGYPSED---KILQIKHHRNDYAEQYPSVTLILNKTMTEESRLALEK 411
+ M A + P P Y S + ++L HH P L+LN ++++ + +
Sbjct: 57 VALMVAASAKPMPPPYRSHNVLPRVLAFYHHWKKIYGNPPPPPLLLNSILSQKQQPRTRR 116
Query: 412 WKQERISE 435
W+ + E
Sbjct: 117 WQVAVVGE 124
>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 633 VQHSILWLLEKIYFSTHLLQTPIHPPLPSLYE 538
++HS W ++KIY+ + + PPL + E
Sbjct: 1228 MRHSFQWSVDKIYYEEDPMLRHVEPPLSTFLE 1259
>04_03_0500 +
16585157-16585201,16586840-16586978,16587456-16587577,
16588850-16588900,16589289-16589601,16592816-16593162
Length = 338
Score = 28.3 bits (60), Expect = 7.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 687 CLRNQQWHQKFPY 649
C RN+ WHQ+ PY
Sbjct: 63 CARNRSWHQRLPY 75
>01_07_0111 -
41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -3
Query: 508 LKCCETWYQLPFELGKIY*ILQLPFRKSALVSTSPKPT*TLQSLFYLILVSPMGIVQ 338
L C QLP +LG +Y + L V PK L+ L YL L G++Q
Sbjct: 762 LSDCHELEQLPEDLGNLYRLEVLDMSDCYRVQVLPKTFCQLKHLKYLNLSDCHGLIQ 818
>01_06_0157 +
27075179-27075529,27075849-27076043,27077705-27078036,
27078157-27078577
Length = 432
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 609 KAIESNVVHPVLKYRGIFDAIADYEDKPTLIEWKKSDKPR 728
K N V VL + +A Y D PT++ W+ ++PR
Sbjct: 174 KGFYKNHVKTVLTRKNTITGVA-YRDDPTILAWELMNEPR 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,554,014
Number of Sequences: 37544
Number of extensions: 430193
Number of successful extensions: 1147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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