Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0698.Seq
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16321| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_36484| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   4e-06
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.59 
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   1.8  
SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)                  30   2.4  
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)                     28   7.2  
SB_7138| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  
SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)           28   9.5  

>SB_16321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 24/65 (36%), Positives = 37/65 (56%)
 Frame = +3

Query: 543 IEKEVEGVWVSVADVLKSISSPKAIESNVVHPVLKYRGIFDAIADYEDKPTLIEWKKSDK 722
           I   + G   S++ VLK ++S  A E  V H  L Y G FD +A +   P +IEWK S++
Sbjct: 252 ISDNINGSLASISSVLKDVTSVIATEKQVSHFSLGYSGYFDMLALFRGVPCIIEWKTSER 311

Query: 723 PRKSI 737
           P+ ++
Sbjct: 312 PKPTL 316



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = +1

Query: 340 EQYPSVTLILNKTMTEESRLALEKWKQERISEMGVEEFNRFYQAQMAVGTKFHNTLR 510
           E+ PSVT ILN T  +   L L KW+ ++  E+G E F ++       GT+FH+ ++
Sbjct: 189 EKTPSVTTILNST--KPLSLIL-KWRDKKKGELGEERFKKYQSEIRKRGTEFHSFIK 242


>SB_36484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 24/60 (40%), Positives = 33/60 (55%)
 Frame = +3

Query: 561 GVWVSVADVLKSISSPKAIESNVVHPVLKYRGIFDAIADYEDKPTLIEWKKSDKPRKSIA 740
           G   SV  VL  I+   A+ES VVH  L Y G  D +A Y+    +I+WK S KP+  ++
Sbjct: 20  GYLKSVGHVLPEITHISAVESVVVHETLGYAGTVDLVAKYKGTHAVIDWKTSQKPKTRLS 79


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 217  HSYTWL-KNICSMCTAKSSPAQPGYPSEDKILQIKHHRNDYAEQYPSVTLILNKTMTEES 393
            HSY  L K +C  CT  +    P  P  D I QI  H +D   +    T I N    +E+
Sbjct: 853  HSYLKLSKTVCCACTPAAGGRAPSKPKADVIKQISLHGSDVHAR----TTIQNTNFVKET 908

Query: 394  RLALE 408
              + E
Sbjct: 909  SFSSE 913


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +2

Query: 203  VLLNNTAIRGLKTSVVCVQPKVHQRNLDIPVKIKSCRL 316
            +++ NT  R +KT  + ++P+  Q ++ + V++  CRL
Sbjct: 3365 MVVTNTLYRSVKTRYLRIEPRTWQSHIALRVEVYGCRL 3402


>SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)
          Length = 378

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 644 QYGVYNIRFYGFWRRYTFQHICYRHPYTLHFLLYTKLATRLSE 516
           +Y VY  R++ +  RY      Y H Y  H++ Y  LAT +++
Sbjct: 248 RYHVYMTRYHVYMTRYHVYMTRY-HVYMTHYVTYRPLATTIAD 289


>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 483  WYQVSQHFKGYFTQPRS-QLRIEKEVEGVWVSVADVLKS-ISSPKAIESNVVH 635
            WY+ + HF G+F QPR   L   K V    V   D+ +S I + K + S   H
Sbjct: 880  WYRDTGHFIGFFGQPRLWHLPSAKSVPSTPVRPYDITESPIKALKNLASKSKH 932


>SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)
          Length = 341

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 301 KILQIKHHRNDYAEQYPSVTLILNKTMTEESRLALEKWKQERI 429
           +IL+ K       EQ  +     N+T+ E+S++A +KW  E++
Sbjct: 179 EILKSKTSSQKLQEQKQAEKEEQNRTIEEKSKIAFDKWMSEKL 221


>SB_7138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 634 CTTFDSMAFGEDILFNTSATDTHT 563
           C T +S+AF +D LF +++++T T
Sbjct: 140 CVTINSLAFSQDSLFLSASSNTET 163


>SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)
          Length = 1003

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 604 EDILFNTSATDTHTPSTSFSIRSW 533
           EDI  N+S T+T T STS S+ S+
Sbjct: 313 EDIFENSSGTETPTSSTSVSLPSY 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,701,044
Number of Sequences: 59808
Number of extensions: 526052
Number of successful extensions: 2020
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2017
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)