Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0698.Seq
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81042-3|CAB02794.2|  660|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81482-3|CAB03955.2|  392|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF016666-3|AAB66085.1|  212|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z82265-6|CAB05170.2|  537|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>Z81042-3|CAB02794.2|  660|Caenorhabditis elegans Hypothetical
           protein C27H6.3 protein.
          Length = 660

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 573 SVADVLKSISSPK-AI-ESNVVHPVLKYRGIFDAIADYEDKPTLIEWKKSDKPRKSIALT 746
           S   V+  I  P+ AI E  V HP L Y+G FDA+  Y+D   +++WK +  P +S   T
Sbjct: 510 SAMPVILEIQDPQNAICEKKVRHPTLAYQGRFDAVVKYKDYWNILDWKTT--PARSSFST 567

Query: 747 LRQ 755
            R+
Sbjct: 568 QRE 570



 Score = 31.5 bits (68), Expect = 0.68
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 400 ALEKWKQERISEMGVEEFNRFYQAQMAVGTKFH 498
           AL  W++ +I EMG+  F      +M++GTK H
Sbjct: 444 ALYLWQKAKIDEMGLSAFKSSMTERMSLGTKTH 476


>Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical
           protein K02B12.8 protein.
          Length = 387

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +1

Query: 370 NKTMTEESRLALEKWKQERISEMGVEEFNR 459
           N+T+ +++ ++LE W+Q R +  GV + ++
Sbjct: 287 NQTIMDKTSMSLENWRQNRANSFGVHDISK 316


>Z81482-3|CAB03955.2|  392|Caenorhabditis elegans Hypothetical
           protein C40H5.4 protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 706 HSIKVGLSS*SAMASKIPLYFSTGCTTFDSMAFGEDILFNT 584
           H  +VG  S    A+ I L    G  T DS  FG+D +F +
Sbjct: 51  HQFRVGSVSKPVTAAAIMLLIDKGHFTLDSKLFGKDSIFGS 91


>AF016666-3|AAB66085.1|  212|Caenorhabditis elegans Hypothetical
           protein B0281.6 protein.
          Length = 212

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 720 YQTSSTRLKSVCLRNQQWHQKFPYTSVRGVQ 628
           Y     R+ S C+ N +W + +P  S+R +Q
Sbjct: 173 YVDDPNRVWSFCIFNSEWSENYPLKSLRDIQ 203


>Z82265-6|CAB05170.2|  537|Caenorhabditis elegans Hypothetical
           protein F02H6.1 protein.
          Length = 537

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 388 ESRLALEKWKQERISEMGVEEFNRFYQAQ 474
           +S+ A E+ +++R+ E+G   FNRF Q Q
Sbjct: 242 DSQFAQEEQRRDRLREIGQRIFNRFEQQQ 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,465,390
Number of Sequences: 27780
Number of extensions: 410784
Number of successful extensions: 1149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)