Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0698.Seq
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   1.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   7.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   7.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   7.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 651 YTSVRGVQHSILWLLEKIYFSTHLLQTPIHPPLPSLYEAGYEVE*SNP 508
           YT+  G Q SI ++ ++  F       P  PP+P   +   E   ++P
Sbjct: 77  YTAPDGQQVSITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHP 124


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 151 SLNHCTVCKRSNHSIINDKFHRIFFSRSVVLLRSIF 44
           ++ + T C+    +I  DK  R FF  S ++L  ++
Sbjct: 343 TVQYDTCCQGRATAIYIDKVSRFFFPFSFLILNVVY 378


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 622 RMLYTPY*SIGEFLMPLLI 678
           R  Y  Y S+G F +PLL+
Sbjct: 193 RQGYVIYSSLGSFFIPLLL 211


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 622 RMLYTPY*SIGEFLMPLLI 678
           R  Y  Y S+G F +PLL+
Sbjct: 193 RQGYVIYSSLGSFFIPLLL 211


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 622 RMLYTPY*SIGEFLMPLLI 678
           R  Y  Y S+G F +PLL+
Sbjct: 193 RQGYVIYSSLGSFFIPLLL 211


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -3

Query: 205 NSKKIQTVPCILP 167
           +S +++T+PC+LP
Sbjct: 619 HSMELRTLPCLLP 631


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -3

Query: 205 NSKKIQTVPCILP 167
           +S +++T+PC+LP
Sbjct: 587 HSMELRTLPCLLP 599


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 534 QLRIEKEVEGVWVSVAD--VLKSISSPKAIESNVVHP 638
           Q R+    + V ++  D  +++ ISSP A+E  ++ P
Sbjct: 334 QTRVPAWCDRVLLNPTDKMLVQDISSPDAVEYGIIGP 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,831
Number of Sequences: 438
Number of extensions: 4875
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)