Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0698.Seq
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37210.1 68418.m04468 DC1 domain-containing protein contains ...    31   1.1  
At5g16320.1 68418.m01908 expressed protein                             29   3.4  
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit...    29   3.4  
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR...    29   4.5  
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ...    28   6.0  
At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly ...    28   6.0  
At2g19050.1 68415.m02225 GDSL-motif lipase/hydrolase family prot...    28   7.9  
At1g12480.1 68414.m01443 C4-dicarboxylate transporter/malic acid...    28   7.9  

>At5g37210.1 68418.m04468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 625

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -3

Query: 139 CTVCKRSNHSIINDKFHRI 83
           C+VCK SN+S+ N+KF+ I
Sbjct: 505 CSVCKESNYSLTNEKFNCI 523


>At5g16320.1 68418.m01908 expressed protein
          Length = 470

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +3

Query: 465 PSSNGSWYQVSQHFKGYFTQPRSQLRI-----EKEVEGVWVSVADVLKSISSPKAIESNV 629
           PS + SW ++  HF    +   S+ R+       E +   +  +D  KS SS +  E  V
Sbjct: 37  PSFSLSWSEIDSHFSSLQSSLASRFRLLHSTSPLEHDSYRIDASDAGKSSSSEEVSEQPV 96

Query: 630 VHPVLK 647
           V P L+
Sbjct: 97  VEPELR 102


>At4g11160.1 68417.m01808 translation initiation factor IF-2,
           mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
           Translation initiation factor IF-2, mitochondrial
           precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
          Length = 743

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 516 FTQPRSQLRIEKEVEGVWVSVADVLKSISSPKAIESNVVH 635
           F +    + ++ +V+G   +VAD L++++SP+ +  N+VH
Sbjct: 519 FVRVELPIVVKSDVQGTAQAVADALRTLNSPQ-VSVNIVH 557


>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1189

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 342 FSIIISVVFNLQDFIFTGISRLRW*TFGCTHTT 244
           F  II   F++ + +F G+S L++  F C H T
Sbjct: 587 FHYIIEEEFDMNERVFEGMSNLQFLRFDCDHDT 619


>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 652

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 304 ILQIKHHRNDYAEQYPSVTLILNKTMTEESRLALEK 411
           + Q+ HHRN  +++ P V + + + +TE+   + E+
Sbjct: 356 VAQLFHHRNGLSDESPKVPISVAEMVTEDEETSREE 391


>At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly
           identical to acetyl-CoA carboxylase 2 (ACC2)
           [Arabidopsis thaliana] GI:11869928
          Length = 1755

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 633 VQHSILWLLEKIYFSTHLLQTPIHPPLPSLY 541
           ++HS  WL+EK Y+    L   + PPL S+Y
Sbjct: 740 MRHSFHWLMEKQYYVEEPLLRHVEPPL-SVY 769


>At2g19050.1 68415.m02225 GDSL-motif lipase/hydrolase family protein
           low similarity to SP|P40603 Anter-specific proline-rich
           protein APG (Protein CEX) (Fragment) {Brassica napus};
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 349

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 676 SAMASKIPLYFSTGCTTFDSMAFGEDILFNTSATDTHTP 560
           +A+  ++P YF  G + FD+   G + + NTSA   ++P
Sbjct: 23  AALGQRVPCYFVFGDSVFDN---GNNNVLNTSAKVNYSP 58


>At1g12480.1 68414.m01443 C4-dicarboxylate transporter/malic acid
           transport family protein contains Pfam profile PF03595:
           C4-dicarboxylate transporter/malic acid transport
           protein
          Length = 556

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 187 FESFWSSFK*HSYTWLKNICSMCTAKSSPAQPGYPS 294
           F  F  S    SYT+     S+ T K + A PGYPS
Sbjct: 436 FTGFKFSVAWWSYTFPMTTASVATIKYAEAVPGYPS 471


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,211,546
Number of Sequences: 28952
Number of extensions: 374466
Number of successful extensions: 1042
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)