Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0697.Seq
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 31 0.32
09_04_0269 + 16265191-16265472,16265574-16266149 31 0.43
01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981... 30 0.99
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348... 29 1.3
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 29 1.3
09_02_0338 + 7426999-7428322,7428390-7428646 28 4.0
05_03_0618 - 16262826-16263097,16263111-16263183 27 5.3
03_03_0229 - 15612829-15612897,15612982-15613083,15613503-156135... 27 7.0
05_04_0167 + 18668004-18668287,18668961-18669043,18669346-186694... 27 9.2
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32... 27 9.2
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461 27 9.2
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 31.5 bits (68), Expect = 0.32
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 172 HARFQLSGNSGRKHSRCCTSILRKFSGRSIVSQLTAAAMVAPTP*GDAKHHPFSTSL 342
H + L + H R + +KFSG+ +V T +V P G A HHP + +L
Sbjct: 49 HVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDAT-RRIVRPLNKGSAVHHPRTRTL 104
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 31.1 bits (67), Expect = 0.43
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -2
Query: 206 LPLFPLS*NRAWEPL---MESTDPQCHILQHRRPRLPL 102
LP P W PL M T P C +L++ RPRLPL
Sbjct: 139 LPFAPSLVRGRWVPLVGEMARTGPLCLLLENPRPRLPL 176
>01_01_1215 +
9815918-9816218,9816772-9816912,9816988-9817106,
9817922-9818191,9818330-9818369,9818519-9818616,
9818745-9818825
Length = 349
Score = 29.9 bits (64), Expect = 0.99
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 169 SHARFQLSGNSGRKHSRCCTS-ILRKFSGRSIVSQLTAAAMVAPTP*GD 312
S + LS +GRK R C+ ++R SI + LT+AA+V P P GD
Sbjct: 137 SQSIVSLSSFAGRKRIRVCSGFVIRWNDSTSIGTILTSAALVRP-PCGD 184
>04_04_0516 +
25833801-25834046,25834412-25834532,25834636-25834821,
25834918-25834944,25836203-25836351,25836553-25836602,
25837181-25837289,25837395-25837532,25838184-25838463,
25838533-25838656,25838994-25839003
Length = 479
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 133 IWHWGSVDSISGSHARFQLSGN---SGRKH--SRCCTSILRKFSGRSIVSQLT 276
++ WGS+D+ H+RF S N +GR H S C ++G +I++ +T
Sbjct: 410 VYRWGSLDANHVGHSRFDSSENHMVTGRHHNMSDCDIDATFYWTGMAIIAIVT 462
>04_03_0985 -
21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 145 GSVDSISGSHARFQLSGNSGRKHSRCCTSI-LRKFSGRSIVSQLT 276
GS DS+ G R + N K C T I LRK SG + +S +T
Sbjct: 668 GSKDSLVGYQVRLDSARNERTKLLFCTTGILLRKLSGNNDLSDVT 712
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -2
Query: 164 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 24
LM C L HR P L + L A L+AI KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 49 RIARREQKLKEHGASSCISGKRGRRC 126
R+ARR + LK + C G R RRC
Sbjct: 11 RMARRRRWLKRRRSGHCRCGLRSRRC 36
>03_03_0229 -
15612829-15612897,15612982-15613083,15613503-15613553,
15613637-15613706,15613816-15613984,15614217-15614326,
15614443-15614510,15615412-15615480,15616649-15616692,
15616803-15617050,15617620-15617633
Length = 337
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 196 NSGRKHSRCCTSILRKFSGRSI 261
N+GR+H+ C+S L ++ GR I
Sbjct: 200 NNGRQHTGSCSSPLTRYLGRDI 221
>05_04_0167 +
18668004-18668287,18668961-18669043,18669346-18669434,
18670085-18670158,18670234-18670284,18671486-18671553,
18671666-18672234,18672333-18672383
Length = 422
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = -2
Query: 302 GVGATMAAAVNCDTMLRPLNFRSMLVQQRLCFLPLFPLS*NRAWEPLMESTDP 144
G T A DT +N +LVQ+ LP W P S DP
Sbjct: 331 GKTVTPVPATGHDTTAVNMNVNGLLVQRAPYTLPSVTAQMKNTWNPADPSADP 383
>05_01_0046 +
320600-320631,320694-320733,320871-320957,321282-321378,
321532-321823,321850-321990,322285-322390
Length = 264
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +1
Query: 55 ARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSHARFQLSGNSGRKHSR 219
A++ + E S G G + W+W D SGS + FQ S SR
Sbjct: 87 AQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141
>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
Length = 353
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 55 ARREQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 168
A RE + ++G A + G R N W G DS+SG
Sbjct: 44 ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,895,232
Number of Sequences: 37544
Number of extensions: 208504
Number of successful extensions: 490
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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