Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0697.Seq
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   30   1.0  
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   27   5.4  
SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)                    27   7.2  

>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +1

Query: 181 FQLSGNSGRKHSRCCTSILRKFSGRSIVSQLTAAAM 288
           FQ++G +G++ +  C  ++R+F G  + SQL+  A+
Sbjct: 133 FQVNGKNGQEET--CEDLVREFEGNGLFSQLSLEAL 166


>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 124 CCNIWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFSGRSIVSQLT 276
           C  ++H G+++ I     R Q+ G+  R    C TS+ ++   R+     T
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKEEGIRAFYRSYT 56


>SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)
          Length = 303

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 371 PNKTEKVRSWSDVENG*CLASPHGVGATMAAA 276
           P K +K R W D ++G C  +   +G T+AAA
Sbjct: 167 PEKLQKARDWDDWKDGLCGVA---IGYTVAAA 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,412,058
Number of Sequences: 59808
Number of extensions: 233619
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)