Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0694.Seq
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    37   2e-04
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    37   2e-04
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    24   1.3  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   4.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    22   4.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 333 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 479
           A  ++   +++  DEPT  LDS     VM +L ++   G TVI   H P
Sbjct: 231 AAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIHQP 279


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 333 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 479
           A  ++   +++  DEPT  LDS     VM +L ++   G TVI   H P
Sbjct: 231 AAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIHQP 279


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 213 VLSGNSDCFVPRSC 254
           V+ GN  C+VP SC
Sbjct: 485 VVEGNPHCWVPHSC 498


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
          protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 60 VPLVALSRQPRIFIRVDLPE 1
          +PL  L  QP+I  +V +PE
Sbjct: 34 LPLFGLKEQPKIEGKVQVPE 53


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 633 LVKTADKLPPARHRVDNRFRPASNIHFFNGGRI 535
           LV T D+     H+   R RP   I    GGR+
Sbjct: 640 LVATIDEAASDVHQTHMRIRPPKKIPTPYGGRL 672


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 633 LVKTADKLPPARHRVDNRFRPASNIHFFNGGRI 535
           LV T D+     H+   R RP   I    GGR+
Sbjct: 640 LVATIDEAASDVHQTHMRIRPPKKIPTPYGGRL 672


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 633 LVKTADKLPPARHRVDNRFRPASNIHFFNGGRI 535
           LV T D+     H+   R RP   I    GGR+
Sbjct: 640 LVATIDEAASDVHQTHMRIRPPKKIPTPYGGRL 672


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 633 LVKTADKLPPARHRVDNRFRPASNIHFFNGGRI 535
           LV T D+     H+   R RP   I    GGR+
Sbjct: 640 LVATIDEAASDVHQTHMRIRPPKKIPTPYGGRL 672


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 244 GTKQSLFPLKTSIDGGYF 191
           G   SL+P+   I GGYF
Sbjct: 67  GIHTSLYPVLVWIHGGYF 84


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 647 HGGRLQRIKC 676
           HGG+L R KC
Sbjct: 386 HGGQLARFKC 395


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,226
Number of Sequences: 336
Number of extensions: 3427
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)